BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0510.1
(234 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 73 1e-14
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 56 4e-09
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 48 2e-06
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 37 WIEEDQSLLIWLNSTLSDSVIPYVVGI-TSSRDLWLNLEENFTASSTTHVLQLQNKLREI 95
W E D + +W+ T++DS++ ++ + ++RDLWL+LE F + LQ +N+LR
Sbjct: 67 WKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTT 126
Query: 96 AKGNLTVTEYLGQIKKITDNLVAARSPSSKNGSIITMLRGLPSEYDAFSAAIRVRHPRVT 155
+L+V EY ++K ++D L SP S ++ +L GL +YD I+ + P +
Sbjct: 127 TIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPS 186
Query: 156 INELHNLLVSEE 167
E ++L+ EE
Sbjct: 187 FTEARSMLLMEE 198
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 5/155 (3%)
Query: 31 NQSYIDWIEEDQSLLIWLNSTLSDSVI-PYVVGITSSRDLWLNLEENFTASSTTHVLQLQ 89
N + ++W + D + + L TL+ V ++SRD+WL ++ F + L+L
Sbjct: 59 NANDVNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLD 118
Query: 90 NKLREIAKGNLTVTEYLGQIKKITDNLVAARSPSSKNGSIITMLRGLPSEYDAFSAAIRV 149
++LR G++ V +Y ++KK+ D+L P + ++ +L GL ++D I+
Sbjct: 119 SELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKH 178
Query: 150 RHPRVTINELHNLLVSEEIIVSDKIKQSSESLTKH 184
R P + ++ +L EE D++K++ + H
Sbjct: 179 RQPFPSFDDAATMLQEEE----DRLKRAIKPNPTH 209
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 19 FIDDNNQSSENINQSYIDWIEEDQSLLIWLNSTLSDSVIPYVVGITSSRDLWLNLEENFT 78
FID + + Y W + + ++ WL ++++D ++ V+ ++ +W +L F
Sbjct: 61 FIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFV 120
Query: 79 ASSTTHVLQLQNKLREIAKGNLTVTEYLGQIKKITDNLVA-ARSPSSKNGSI 129
+ QL+ +L + +G +V EY G++ K+ L A P K G
Sbjct: 121 PCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGC 172