BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0550.1
(121 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 93 7e-23
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 93 7e-23
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 57 1e-10
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 92.8 bits (229), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 1 MVQPSGFQ----DPLHPHYVCKLHKSLYGLKQAPRAWYEALMDALLGLGFTTSMSDSSLF 56
M P G+ D L P+ VC L KS+YGLKQA R W+ L+G GF S SD + F
Sbjct: 210 MKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYF 269
Query: 57 VSYSRGVLTIVLICIDDILVTGTSSDACKSLIDKLSSSFSMKDLGDLHYFLGLEVKRDNS 116
+ + + VL+ +DDI++ + A L +L S F ++DLG L YFLGLE+ R +
Sbjct: 270 LKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAA 329
Query: 117 CLSL 120
+++
Sbjct: 330 GINI 333
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 92.8 bits (229), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 1 MVQPSGFQ----DPLHPHYVCKLHKSLYGLKQAPRAWYEALMDALLGLGFTTSMSDSSLF 56
M P G+ D L P+ VC L KS+YGLKQA R W+ L+G GF S SD + F
Sbjct: 210 MKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYF 269
Query: 57 VSYSRGVLTIVLICIDDILVTGTSSDACKSLIDKLSSSFSMKDLGDLHYFLGLEVKRDNS 116
+ + + VL+ +DDI++ + A L +L S F ++DLG L YFLGLE+ R +
Sbjct: 270 LKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAA 329
Query: 117 CLSL 120
+++
Sbjct: 330 GINI 333
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 57.4 bits (137), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 67 VLICIDDILVTGTSSDACKSLIDKLSSSFSMKDLGDLHYFLGLEVKRDNSCLSLT 121
+L+ +DDIL+TG+S+ LI +LSS+FSMKDLG +HYFLG+++K S L L+
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLS 57