BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0610.1
(768 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15270.3 | RNA-binding KH domain-containing protein | Chr5:49... 335 e-106
AT5G15270.2 | RNA-binding KH domain-containing protein | Chr5:49... 335 e-106
AT5G15270.1 | RNA-binding KH domain-containing protein | Chr5:49... 335 e-106
AT5G46190.4 | RNA-binding KH domain-containing protein | Chr5:18... 277 7e-83
AT5G46190.3 | RNA-binding KH domain-containing protein | Chr5:18... 277 7e-83
>AT5G15270.3 | RNA-binding KH domain-containing protein |
Chr5:4958738-4960737 FORWARD LENGTH=533 | 201606
Length = 533
Score = 335 bits (859), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/491 (41%), Positives = 289/491 (58%), Gaps = 55/491 (11%)
Query: 12 RKRPPFQPDRRGGFKRSKRSNSAFEQNAPIPSGSEETIYRLLCPIRKIGSVIGKGGGIIK 71
R RP D GG KR R + + ++T++R LCP++KIGSVIG+GG I+K
Sbjct: 18 RSRPQSDYDDNGGSKRRYRG----DDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIVK 73
Query: 72 ALRDETGAKIKVDEAVPGSDERVINIFSPAAKKPRMQDTTEDAEDPENDDPIEKELETME 131
LR++T +KI++ EA+PG DERVI I+SP+ D T D E + +
Sbjct: 74 QLRNDTRSKIRIGEAIPGCDERVITIYSPS-------DETNAFGDGE---------KVLS 117
Query: 132 PHCSAQDALLKVQKRINEDDDLYGGKEENEDNNE-EDVVTARLLVPSNQVGCLLGKGGHI 190
P AQDAL ++ R+ DD +ED+ E E VTA+LLVPS+Q+GC+LG+GG I
Sbjct: 118 P---AQDALFRIHDRVVADD------ARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQI 168
Query: 191 IQNLRSNTGANIRILPAENLPTCAMATDELVQISGVTAVAMRALYDISTMLHENPRPPMD 250
+QN+RS TGA IRI+ N+P CA+ +DEL+QISG + +AL I++ LHENP +
Sbjct: 169 VQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQN 228
Query: 251 YPMAAGGPDFYPRGPPMLPQGNRGWSHRPGDVPPPMPWDRGFGNEPSRYGRGGFNGAPPA 310
++GG YP G M SH G P G YGR + + P
Sbjct: 229 LLSSSGG---YPAGSLM--------SHAGG------PRLVGLAPLMGSYGRDAGDWSRPL 271
Query: 311 ----NNGKTSDEFSMKILCSAEKIGGVIGKGGSNVNQLQQETGASIHVADTAQEADERVI 366
N + EF ++++ E I VIGKGG+ +NQL+QET A+I V + E ++ +I
Sbjct: 272 YQPPRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLI 331
Query: 367 IVSSYEAPWDPRSQTIEAILLLQSKTNEIGEKG----NLVTRLLVPSSKVGCLLGQGGHI 422
+S+ E D S TIEA++ LQ K ++ E+ + TRLLVPSS++GC+LG+GG I
Sbjct: 332 TISAREVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAI 391
Query: 423 INEMRRRTRADIRIISKEGKPPCASNDEELVQIAGNVNVARDALAEIASRLRARSLEGVS 482
I EMRR T+A+IRI+ KE P AS+D+E+VQI+G ++VA++AL +I SRLRA +
Sbjct: 392 ITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDREG 451
Query: 483 AAAEPLPPRPF 493
A + +P P+
Sbjct: 452 AVSALMPVLPY 462
>AT5G15270.2 | RNA-binding KH domain-containing protein |
Chr5:4958738-4960947 FORWARD LENGTH=548 | 201606
Length = 548
Score = 335 bits (859), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/491 (41%), Positives = 289/491 (58%), Gaps = 55/491 (11%)
Query: 12 RKRPPFQPDRRGGFKRSKRSNSAFEQNAPIPSGSEETIYRLLCPIRKIGSVIGKGGGIIK 71
R RP D GG KR R + + ++T++R LCP++KIGSVIG+GG I+K
Sbjct: 18 RSRPQSDYDDNGGSKRRYRG----DDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIVK 73
Query: 72 ALRDETGAKIKVDEAVPGSDERVINIFSPAAKKPRMQDTTEDAEDPENDDPIEKELETME 131
LR++T +KI++ EA+PG DERVI I+SP+ D T D E + +
Sbjct: 74 QLRNDTRSKIRIGEAIPGCDERVITIYSPS-------DETNAFGDGE---------KVLS 117
Query: 132 PHCSAQDALLKVQKRINEDDDLYGGKEENEDNNE-EDVVTARLLVPSNQVGCLLGKGGHI 190
P AQDAL ++ R+ DD +ED+ E E VTA+LLVPS+Q+GC+LG+GG I
Sbjct: 118 P---AQDALFRIHDRVVADD------ARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQI 168
Query: 191 IQNLRSNTGANIRILPAENLPTCAMATDELVQISGVTAVAMRALYDISTMLHENPRPPMD 250
+QN+RS TGA IRI+ N+P CA+ +DEL+QISG + +AL I++ LHENP +
Sbjct: 169 VQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQN 228
Query: 251 YPMAAGGPDFYPRGPPMLPQGNRGWSHRPGDVPPPMPWDRGFGNEPSRYGRGGFNGAPPA 310
++GG YP G M SH G P G YGR + + P
Sbjct: 229 LLSSSGG---YPAGSLM--------SHAGG------PRLVGLAPLMGSYGRDAGDWSRPL 271
Query: 311 ----NNGKTSDEFSMKILCSAEKIGGVIGKGGSNVNQLQQETGASIHVADTAQEADERVI 366
N + EF ++++ E I VIGKGG+ +NQL+QET A+I V + E ++ +I
Sbjct: 272 YQPPRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLI 331
Query: 367 IVSSYEAPWDPRSQTIEAILLLQSKTNEIGEKG----NLVTRLLVPSSKVGCLLGQGGHI 422
+S+ E D S TIEA++ LQ K ++ E+ + TRLLVPSS++GC+LG+GG I
Sbjct: 332 TISAREVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAI 391
Query: 423 INEMRRRTRADIRIISKEGKPPCASNDEELVQIAGNVNVARDALAEIASRLRARSLEGVS 482
I EMRR T+A+IRI+ KE P AS+D+E+VQI+G ++VA++AL +I SRLRA +
Sbjct: 392 ITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDREG 451
Query: 483 AAAEPLPPRPF 493
A + +P P+
Sbjct: 452 AVSALMPVLPY 462
>AT5G15270.1 | RNA-binding KH domain-containing protein |
Chr5:4958738-4960947 FORWARD LENGTH=548 | 201606
Length = 548
Score = 335 bits (859), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/491 (41%), Positives = 289/491 (58%), Gaps = 55/491 (11%)
Query: 12 RKRPPFQPDRRGGFKRSKRSNSAFEQNAPIPSGSEETIYRLLCPIRKIGSVIGKGGGIIK 71
R RP D GG KR R + + ++T++R LCP++KIGSVIG+GG I+K
Sbjct: 18 RSRPQSDYDDNGGSKRRYRG----DDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIVK 73
Query: 72 ALRDETGAKIKVDEAVPGSDERVINIFSPAAKKPRMQDTTEDAEDPENDDPIEKELETME 131
LR++T +KI++ EA+PG DERVI I+SP+ D T D E + +
Sbjct: 74 QLRNDTRSKIRIGEAIPGCDERVITIYSPS-------DETNAFGDGE---------KVLS 117
Query: 132 PHCSAQDALLKVQKRINEDDDLYGGKEENEDNNE-EDVVTARLLVPSNQVGCLLGKGGHI 190
P AQDAL ++ R+ DD +ED+ E E VTA+LLVPS+Q+GC+LG+GG I
Sbjct: 118 P---AQDALFRIHDRVVADD------ARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQI 168
Query: 191 IQNLRSNTGANIRILPAENLPTCAMATDELVQISGVTAVAMRALYDISTMLHENPRPPMD 250
+QN+RS TGA IRI+ N+P CA+ +DEL+QISG + +AL I++ LHENP +
Sbjct: 169 VQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQN 228
Query: 251 YPMAAGGPDFYPRGPPMLPQGNRGWSHRPGDVPPPMPWDRGFGNEPSRYGRGGFNGAPPA 310
++GG YP G M SH G P G YGR + + P
Sbjct: 229 LLSSSGG---YPAGSLM--------SHAGG------PRLVGLAPLMGSYGRDAGDWSRPL 271
Query: 311 ----NNGKTSDEFSMKILCSAEKIGGVIGKGGSNVNQLQQETGASIHVADTAQEADERVI 366
N + EF ++++ E I VIGKGG+ +NQL+QET A+I V + E ++ +I
Sbjct: 272 YQPPRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLI 331
Query: 367 IVSSYEAPWDPRSQTIEAILLLQSKTNEIGEKG----NLVTRLLVPSSKVGCLLGQGGHI 422
+S+ E D S TIEA++ LQ K ++ E+ + TRLLVPSS++GC+LG+GG I
Sbjct: 332 TISAREVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAI 391
Query: 423 INEMRRRTRADIRIISKEGKPPCASNDEELVQIAGNVNVARDALAEIASRLRARSLEGVS 482
I EMRR T+A+IRI+ KE P AS+D+E+VQI+G ++VA++AL +I SRLRA +
Sbjct: 392 ITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDREG 451
Query: 483 AAAEPLPPRPF 493
A + +P P+
Sbjct: 452 AVSALMPVLPY 462
>AT5G46190.4 | RNA-binding KH domain-containing protein |
Chr5:18723435-18725834 REVERSE LENGTH=644 | 201606
Length = 644
Score = 277 bits (709), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 213/628 (33%), Positives = 309/628 (49%), Gaps = 84/628 (13%)
Query: 48 TIYRLLCPIRKIGSVIGKGGGIIKALRDETGAKIKVDEAVPGSDERVINIFSPAAKKPRM 107
+YR+LCP +GSVIGK G +I +R ET A+IKV + PG ERVI IF ++K +
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 108 QDTTEDAEDPENDDPIE-KELETMEPHCSAQDALLKVQKRINEDDDLYGGKEENEDNNEE 166
D IE EL+ P CSAQ ALLKV I EN + +
Sbjct: 104 VD-------------IEYSELDYSVPLCSAQAALLKVHDAIVAS---LATAAENTKIDRD 147
Query: 167 DVVTARLLVPSNQVGCLLGKGGHIIQNLRSNTGANIRILPAENLP---TCAMATDELVQI 223
D RLLVPS+Q ++GK G II+N+R T AN++++ + TCAM D +V I
Sbjct: 148 DFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMI 207
Query: 224 SGVTAVAMRALYDISTMLHE-NPRP--PMD-----YPMAAGGPD---FYPRGPPMLPQGN 272
SG T +AL+ +S ++++ +PR P+D P + P YP+ + P +
Sbjct: 208 SGETESVKKALFAVSAIMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQAG-LYPSQD 266
Query: 273 RGWSHRPGDVPPPMPWDRGFGNEPSRYGRGGFNGAP-------PANNG----KTSDEFSM 321
+ H G P YG N P P +G S++ ++
Sbjct: 267 SIFQHGAN-------VSSFIGTLPQGYGENAANPVPVFSASALPVVHGFGGSSRSEKLAI 319
Query: 322 KILCSAEKIGGVIGKGGSNVNQLQQETGASIHVADT-AQEADERVIIVSSYEAPWDPRSQ 380
K++CS+ KIG VIGKGG + ++Q +G+ I V D+ D+ VI V++ E+P D +S
Sbjct: 320 KVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSM 379
Query: 381 TIEAILLLQSKTNEIGEKGNLVTRLLVPSSKVGCLLGQGGHIINEMRRRTRADIRIISKE 440
+EA+LLLQ K N+ E + +LLV S +GC++G+ G II+E+R+RT+ADI I
Sbjct: 380 AVEAVLLLQEKINDEDED-KVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGN 438
Query: 441 GKPPCASNDEELVQIAGNVNVARDALAEIASRLRARSLEGVSAAAEPLPP---------- 490
P CA ++ELV+I+G V+ RDAL +I RLR L + PP
Sbjct: 439 NTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRNQPPARSENNNFFS 498
Query: 491 --RPFRGYGPPESFYERGVPPSGM----RGAGSSSAYDM---QGGVPEYEPPSYPVRPPP 541
G P+SF VP R + S+ M GG+ Y S+PV
Sbjct: 499 SSSSNTGLALPQSFMS-SVPQVASVDFNRRPETGSSMSMLPSSGGI--YGYGSFPVGNTS 555
Query: 542 ATPGYQTI---------DHCMEITIPNGAVGPVLAAGGSNIANIGQMSGAKVKLNNPTNG 592
ME+ IP AVG V+ GG N+ NI ++SGA +++++ N
Sbjct: 556 YGSNSSYSSNLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNS 615
Query: 593 SECTVE-IRGSSEQMNAAQSLLQAYISS 619
V I G+SEQ A++L QA+I S
Sbjct: 616 HGGRVALISGTSEQKRTAENLFQAFIMS 643
>AT5G46190.3 | RNA-binding KH domain-containing protein |
Chr5:18723435-18725834 REVERSE LENGTH=644 | 201606
Length = 644
Score = 277 bits (709), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 213/628 (33%), Positives = 309/628 (49%), Gaps = 84/628 (13%)
Query: 48 TIYRLLCPIRKIGSVIGKGGGIIKALRDETGAKIKVDEAVPGSDERVINIFSPAAKKPRM 107
+YR+LCP +GSVIGK G +I +R ET A+IKV + PG ERVI IF ++K +
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 108 QDTTEDAEDPENDDPIE-KELETMEPHCSAQDALLKVQKRINEDDDLYGGKEENEDNNEE 166
D IE EL+ P CSAQ ALLKV I EN + +
Sbjct: 104 VD-------------IEYSELDYSVPLCSAQAALLKVHDAIVAS---LATAAENTKIDRD 147
Query: 167 DVVTARLLVPSNQVGCLLGKGGHIIQNLRSNTGANIRILPAENLP---TCAMATDELVQI 223
D RLLVPS+Q ++GK G II+N+R T AN++++ + TCAM D +V I
Sbjct: 148 DFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMI 207
Query: 224 SGVTAVAMRALYDISTMLHE-NPRP--PMD-----YPMAAGGPD---FYPRGPPMLPQGN 272
SG T +AL+ +S ++++ +PR P+D P + P YP+ + P +
Sbjct: 208 SGETESVKKALFAVSAIMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQAG-LYPSQD 266
Query: 273 RGWSHRPGDVPPPMPWDRGFGNEPSRYGRGGFNGAP-------PANNG----KTSDEFSM 321
+ H G P YG N P P +G S++ ++
Sbjct: 267 SIFQHGAN-------VSSFIGTLPQGYGENAANPVPVFSASALPVVHGFGGSSRSEKLAI 319
Query: 322 KILCSAEKIGGVIGKGGSNVNQLQQETGASIHVADT-AQEADERVIIVSSYEAPWDPRSQ 380
K++CS+ KIG VIGKGG + ++Q +G+ I V D+ D+ VI V++ E+P D +S
Sbjct: 320 KVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSM 379
Query: 381 TIEAILLLQSKTNEIGEKGNLVTRLLVPSSKVGCLLGQGGHIINEMRRRTRADIRIISKE 440
+EA+LLLQ K N+ E + +LLV S +GC++G+ G II+E+R+RT+ADI I
Sbjct: 380 AVEAVLLLQEKINDEDED-KVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGN 438
Query: 441 GKPPCASNDEELVQIAGNVNVARDALAEIASRLRARSLEGVSAAAEPLPP---------- 490
P CA ++ELV+I+G V+ RDAL +I RLR L + PP
Sbjct: 439 NTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRNQPPARSENNNFFS 498
Query: 491 --RPFRGYGPPESFYERGVPPSGM----RGAGSSSAYDM---QGGVPEYEPPSYPVRPPP 541
G P+SF VP R + S+ M GG+ Y S+PV
Sbjct: 499 SSSSNTGLALPQSFMS-SVPQVASVDFNRRPETGSSMSMLPSSGGI--YGYGSFPVGNTS 555
Query: 542 ATPGYQTI---------DHCMEITIPNGAVGPVLAAGGSNIANIGQMSGAKVKLNNPTNG 592
ME+ IP AVG V+ GG N+ NI ++SGA +++++ N
Sbjct: 556 YGSNSSYSSNLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNS 615
Query: 593 SECTVE-IRGSSEQMNAAQSLLQAYISS 619
V I G+SEQ A++L QA+I S
Sbjct: 616 HGGRVALISGTSEQKRTAENLFQAFIMS 643