BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0650.1
(669 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 188 1e-51
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 131 4e-32
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 131 4e-32
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 126 7e-30
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 106 4e-24
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 188 bits (478), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 158/559 (28%), Positives = 249/559 (44%), Gaps = 61/559 (10%)
Query: 152 AVPRYQMQCFAIPKSISKSIKNLQRSFWW---GKQKGFFTRSWKDICTPKRLGGLGMHLP 208
A+P Y M CF +PK++ K I ++ FWW + KG ++W + K GG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 209 EIDNSAMLSKLAWTVLSSPTKLWVKILKAKYFPKFD---RPGTVKPYHSWTWKNIHKHLS 265
E N A+L K W +LS P L K+ K++YF K D P +P S+ WK+IH
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRP--SFVWKSIHASQE 119
Query: 266 LVEELSTWEIHNGNDINIWKDNWTPN----------RITPKLRPEETMINKVSQLI--IN 313
++ + + + NG DI IW+ W + R+ P+ + I KVS LI
Sbjct: 120 ILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESG 179
Query: 314 NQWNYDLLNSMFSLETINCISSIPLNPEGK---DKRQWSLTKSGKYTVKSMHNYLTTSMN 370
+W D++ +F I L P G+ D W T SG YTVKS + LT +N
Sbjct: 180 REWRKDVIEMLFPEVERKLIGE--LRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIIN 237
Query: 371 TPNSN--------NYNWNFIWHLNIAPRIQIFIWKICTSSLPVRSKIG-KYLNIDMHCPN 421
+S N + IW +P+IQ F+WK ++SLPV + ++L+ + C
Sbjct: 238 KRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIR 297
Query: 422 CESL-ETIEHALLHCNLARNIWFYFNIIV-------DNIVSLKDWIFSWQNTPHQIYTTG 473
C S ET+ H L C AR W +I + D+I W+F+ N Q +
Sbjct: 298 CPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQ-WEKA 356
Query: 474 NIHIATILWILWKIRCDHCFQYEITNVNTIIK---------MIHTFPNPNRKITTTKHKD 524
+ + +LW LWK R + F+ N +++ I T
Sbjct: 357 SQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSS 416
Query: 525 RNFWTPPPSSFLKINVDASFIDNISVVGLSLIIHNDKSIFIAAQTNTCRCRNSEESEALA 584
W PPP ++K N DA++ + G+ ++ N+K + R +S A
Sbjct: 417 CGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKG---EVKWMGARALPKLKSVLEA 473
Query: 585 ILSGLTWA---FNNGYYN-IIIESDNLNIINHLRNDQIEISWQTKMHISKIHQMKYRFEA 640
L + WA + YN +I ESD+ +I L ND+I S K I + ++ +F
Sbjct: 474 ELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPS--LKPTIQDLQRLLSQFTE 531
Query: 641 ISFQYASRNSNSLADKLTK 659
+ F + R N+LA+++ +
Sbjct: 532 VKFVFIPREGNTLAERVAR 550
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 131 bits (330), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 110/432 (25%), Positives = 183/432 (42%), Gaps = 21/432 (4%)
Query: 27 LILSHLLFADNCILFGKNSLDNIHRLKDILKTFCDSSGQTINYNKSNIFYSKNSHPKFKR 86
++++HL FAD+ ++F +I + I F D SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 87 IIMKTLKVKYASTSEKYLGAHLFIGAKKTKAFEDLLSQIKSKLEKWSNSFVSQAGRAVII 146
I+ + + +YLG L T + L+ +I+ ++ KW+ +S AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 147 SAIAAAVPRYQMQCFAIPKSISKSIKNLQRSFWWGKQKGFFTR---SWKDICTPKRLGGL 203
S++ ++ + M F +P + K I ++ SF W + + +W D+CTPK GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 204 GMHLPEIDNSAMLSKLAWTVLSSPTKLWVKILKAKYFPK--FDRPGTVKPYHSWTWKNIH 261
G+ + N L KL W +LSS T LWV+ L+ K F SW WK I
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 262 KHLSLVEELSTWEIHNGNDINIWKDNWTPNRITPKLRPEETMIN-------KVSQLIINN 314
KH +L +IHNG++ + W DNW+ + I+ V++ ++N+
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNH 303
Query: 315 QWNYDLLNSMFSLETINCISSIPLNPEGKDKRQWSLTKSGKYTVKSMHNYLTTSMNTPNS 374
+ +++ +E + G+D +W K K N T T
Sbjct: 304 RPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW---KGNGDIFKPCFNTKETWAATREP 360
Query: 375 N-NYNW-NFIWHLNIAPRIQIFIWKICTSSLPVRSKIGKY-LNIDMHCPNCESL-ETIEH 430
NW +W + P+ + W + L ++ + D C C L ET +H
Sbjct: 361 KLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDH 420
Query: 431 ALLHCNLARNIW 442
C + +W
Sbjct: 421 LFFTCPYSAEVW 432
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 131 bits (330), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 110/432 (25%), Positives = 183/432 (42%), Gaps = 21/432 (4%)
Query: 27 LILSHLLFADNCILFGKNSLDNIHRLKDILKTFCDSSGQTINYNKSNIFYSKNSHPKFKR 86
++++HL FAD+ ++F +I + I F D SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 87 IIMKTLKVKYASTSEKYLGAHLFIGAKKTKAFEDLLSQIKSKLEKWSNSFVSQAGRAVII 146
I+ + + +YLG L T + L+ +I+ ++ KW+ +S AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 147 SAIAAAVPRYQMQCFAIPKSISKSIKNLQRSFWWGKQKGFFTR---SWKDICTPKRLGGL 203
S++ ++ + M F +P + K I ++ SF W + + +W D+CTPK GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 204 GMHLPEIDNSAMLSKLAWTVLSSPTKLWVKILKAKYFPK--FDRPGTVKPYHSWTWKNIH 261
G+ + N L KL W +LSS T LWV+ L+ K F SW WK I
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 262 KHLSLVEELSTWEIHNGNDINIWKDNWTPNRITPKLRPEETMIN-------KVSQLIINN 314
KH +L +IHNG++ + W DNW+ + I+ V++ ++N+
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNH 303
Query: 315 QWNYDLLNSMFSLETINCISSIPLNPEGKDKRQWSLTKSGKYTVKSMHNYLTTSMNTPNS 374
+ +++ +E + G+D +W K K N T T
Sbjct: 304 RPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW---KGNGDIFKPCFNTKETWAATREP 360
Query: 375 N-NYNW-NFIWHLNIAPRIQIFIWKICTSSLPVRSKIGKY-LNIDMHCPNCESL-ETIEH 430
NW +W + P+ + W + L ++ + D C C L ET +H
Sbjct: 361 KLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDH 420
Query: 431 ALLHCNLARNIW 442
C + +W
Sbjct: 421 LFFTCPYSAEVW 432
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 110/433 (25%), Positives = 183/433 (42%), Gaps = 21/433 (4%)
Query: 27 LILSHLLFADNCILFGKNSLDNIHRLKDILKTFCDSSGQTINYNKSNIFYSKNSHPKFKR 86
++++HL FAD+ ++F +I + I F D SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 87 IIMKTLKVKYASTSEKYLGAHLFIGAKKTKAFEDLLSQIKSKLEKWSNSFVSQAGRAVII 146
I+ + + +YLG L T + L+ +I+ ++ KW+ +S AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 147 SAIAAAVPRYQMQCFAIPKSISKSIKNLQRSFWWGKQKGFFTR---SWKDICTPKRLGGL 203
S++ ++ + M F +P + K I ++ SF W + + +W D+CTPK GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 204 GMHLPEIDNSAMLSKLAWTVLSSPTKLWVKILKAKYFPK--FDRPGTVKPYHSWTWKNIH 261
G+ + N L KL W +LSS T LWV+ L+ K F SW WK I
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 262 KHLSLVEELSTWEIHNGNDINIWKDNWTPNRITPKLRPEETMIN-------KVSQLIINN 314
KH +L +IHNG++ + W DNW+ + I+ V++ ++N+
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNH 303
Query: 315 QWNYDLLNSMFSLETINCISSIPLNPEGKDKRQWSLTKSGKYTVKSMHNYLTTSMNTPNS 374
+ +++ +E + G+D +W K K N T T
Sbjct: 304 RPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW---KGNGDIFKPCFNTKETWAATREP 360
Query: 375 N-NYNW-NFIWHLNIAPRIQIFIWKICTSSLPVRSKIGKY-LNIDMHCPNCESL-ETIEH 430
NW +W + P+ + W + L ++ + D C C L ET +H
Sbjct: 361 KLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDH 420
Query: 431 ALLHCNLARNIWF 443
C + + F
Sbjct: 421 LFFTCPYSAEVPF 433
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 155/371 (41%), Gaps = 20/371 (5%)
Query: 88 IMKTLKVKYASTSEKYLGAHLFIGAKKTKAFEDLLSQIKSKLEKWSNSFVSQAGRAVIIS 147
I+ + + +YLG L T + L+ +I+ ++ KW+ +S AGR +IS
Sbjct: 12 ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLIS 71
Query: 148 AIAAAVPRYQMQCFAIPKSISKSIKNLQRSFWWGKQKGFFTR---SWKDICTPKRLGGLG 204
++ ++ + M F +P + K I ++ SF W + + +W D+CTPK GGLG
Sbjct: 72 SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLG 131
Query: 205 MHLPEIDNSAMLSKLAWTVLSSPTKLWVKILKAKYFPK--FDRPGTVKPYHSWTWKNIHK 262
+ + N L KL W +LSS T LWV+ L+ K F SW WK I K
Sbjct: 132 IRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILK 190
Query: 263 HLSLVEELSTWEIHNGNDINIWKDNWTPNRITPKLRPEETMIN-------KVSQLIINNQ 315
H +L +IHNG++ + W DNW+ + I+ V++ ++N++
Sbjct: 191 HRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHR 250
Query: 316 WNYDLLNSMFSLETINCISSIPLNPEGKDKRQWSLTKSGKYTVKSMHNYLTTSMNTPNSN 375
+++ +E + G+D +W K K N T T
Sbjct: 251 PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW---KGNGDIFKPCFNTKETWAATREPK 307
Query: 376 -NYNW-NFIWHLNIAPRIQIFIWKICTSSLPVRSKIGKY-LNIDMHCPNCESL-ETIEHA 431
NW +W + P+ + W + L ++ + D C C L ET +H
Sbjct: 308 LKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHL 367
Query: 432 LLHCNLARNIW 442
C + +W
Sbjct: 368 FFTCPYSAEVW 378