BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0780.1
(524 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like... 62 3e-10
AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 62 3e-10
AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORW... 60 2e-09
AT5G51080.2 | RNase H family protein | Chr5:20769022-20770675 RE... 57 2e-08
AT5G51080.1 | RNase H family protein | Chr5:20769022-20770675 RE... 57 2e-08
>AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 365 TLSVDGSSNMN--GVGLGVVLTSPEGDLIQQAIRCGFKATNNEIEYEALIAGMNLAKEMG 422
T+ DG+S N G G VL + + ++ ATNN EY AL+ G+ A + G
Sbjct: 156 TIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKG 215
Query: 423 VQKLAIKSDSQLVVNQLQGTYQAKDVKMATYVSHVKELQSQFTEVSFEQVPRLENGYVDA 482
+ + + DS LV Q+QG ++ KMA KEL + F + + R +N D
Sbjct: 216 FKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADK 275
Query: 483 LANLGSSIPTKDEQT 497
AN S+I D QT
Sbjct: 276 QAN--SAIFLADGQT 288
>AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 365 TLSVDGSSNMN--GVGLGVVLTSPEGDLIQQAIRCGFKATNNEIEYEALIAGMNLAKEMG 422
T+ DG+S N G G VL + + ++ ATNN EY AL+ G+ A + G
Sbjct: 156 TIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKG 215
Query: 423 VQKLAIKSDSQLVVNQLQGTYQAKDVKMATYVSHVKELQSQFTEVSFEQVPRLENGYVDA 482
+ + + DS LV Q+QG ++ KMA KEL + F + + R +N D
Sbjct: 216 FKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADK 275
Query: 483 LANLGSSIPTKDEQT 497
AN S+I D QT
Sbjct: 276 QAN--SAIFLADGQT 288
>AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORWARD
LENGTH=353 | 201606
Length = 353
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 369 DGSSNMN-GV-GLGVVLTSPEGDLIQQAIRCGFK-ATNNEIEYEALIAGMNLAKEMGVQK 425
DG+S N G+ G VL + +G LI + +R G ATNN EY ALI G+ A E G +
Sbjct: 222 DGASKGNPGLSGAAAVLKTEDGSLICR-VRQGLGIATNNAAEYHALILGLKYAIEKGYKN 280
Query: 426 LAIKSDSQLVVNQLQGTYQAKDVKMATYVSHVKELQSQFTEVSFEQVPRLENGYVDALAN 485
+ +K DS+LV Q++G ++ +A K L ++ V R N D AN
Sbjct: 281 IKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADADEQAN 340
Query: 486 LGSSIP 491
L +P
Sbjct: 341 LAVRLP 346
>AT5G51080.2 | RNase H family protein | Chr5:20769022-20770675
REVERSE LENGTH=322 | 201606
Length = 322
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 366 LSVDGSSNMN-GV-GLGVVLTSPEGDLIQQAIRCGFK-ATNNEIEYEALIAGMNLAKEMG 422
+ DG+S N G+ G VL + +G LI + +R G ATNN EY LI G+ A E G
Sbjct: 188 IEFDGASKGNPGLSGAAAVLKTEDGSLIFK-MRQGLGIATNNAAEYHGLILGLKHAIEKG 246
Query: 423 VQKLAIKSDSQLVVNQLQGTYQAKDVKMATYVSHVKELQSQFTEVSFEQVPRLENGYVDA 482
K+ +K+DS+LV Q++G ++ ++ K+L + V R N D
Sbjct: 247 YTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDADE 306
Query: 483 LANLGSSI 490
AN+ + +
Sbjct: 307 QANMAARL 314
>AT5G51080.1 | RNase H family protein | Chr5:20769022-20770675
REVERSE LENGTH=322 | 201606
Length = 322
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 366 LSVDGSSNMN-GV-GLGVVLTSPEGDLIQQAIRCGFK-ATNNEIEYEALIAGMNLAKEMG 422
+ DG+S N G+ G VL + +G LI + +R G ATNN EY LI G+ A E G
Sbjct: 188 IEFDGASKGNPGLSGAAAVLKTEDGSLIFK-MRQGLGIATNNAAEYHGLILGLKHAIEKG 246
Query: 423 VQKLAIKSDSQLVVNQLQGTYQAKDVKMATYVSHVKELQSQFTEVSFEQVPRLENGYVDA 482
K+ +K+DS+LV Q++G ++ ++ K+L + V R N D
Sbjct: 247 YTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDADE 306
Query: 483 LANLGSSI 490
AN+ + +
Sbjct: 307 QANMAARL 314