BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0920.1
(130 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 114 2e-30
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 114 2e-30
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 54 1e-09
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 114 bits (286), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 28/155 (18%)
Query: 3 SMSDYQVWDLIDLPDGAKPIECKWVFKMKTDEDGNVSVFKARLVANGYKQ---------- 52
+M W++ LP KPI CKWV+K+K + DG + +KARLVA GY Q
Sbjct: 108 AMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETF 167
Query: 53 --------------IHVHYDYEIWQMDVKTAFLNGNLEDDVYMTQPEDFV----DSNNAG 94
I Y++ + Q+D+ AFLNG+L++++YM P + DS
Sbjct: 168 SPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPN 227
Query: 95 KVCKLKRSISGLKQASRSWNLRFDEAIKEFGFLKN 129
VC LK+SI GLKQASR W L+F + FGF+++
Sbjct: 228 AVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQS 262
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 114 bits (286), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 28/155 (18%)
Query: 3 SMSDYQVWDLIDLPDGAKPIECKWVFKMKTDEDGNVSVFKARLVANGYKQ---------- 52
+M W++ LP KPI CKWV+K+K + DG + +KARLVA GY Q
Sbjct: 108 AMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETF 167
Query: 53 --------------IHVHYDYEIWQMDVKTAFLNGNLEDDVYMTQPEDFV----DSNNAG 94
I Y++ + Q+D+ AFLNG+L++++YM P + DS
Sbjct: 168 SPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPN 227
Query: 95 KVCKLKRSISGLKQASRSWNLRFDEAIKEFGFLKN 129
VC LK+SI GLKQASR W L+F + FGF+++
Sbjct: 228 AVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQS 262
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 53.9 bits (128), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 1 MDSMSDYQVWDLIDLPDGAKPIECKWVFKMKTDEDGNVSVFKARLVANGYKQIHVHYDYE 60
+D++S + W L+ P + CKWVFK K DG + KARLVA G+ Q Y E
Sbjct: 48 LDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVE 107
Query: 61 IWQMDVKTAFLNGNL 75
+ V+TA + L
Sbjct: 108 TYSPVVRTATIRTIL 122