BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g0990.1
(292 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 71 2e-13
AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 67 8e-13
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 67 2e-12
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 65 1e-11
AT2G13980.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 61 3e-11
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 118/270 (43%), Gaps = 30/270 (11%)
Query: 8 CPICKESCETPIHFIQEC---KVTIEIVKFFIPTLNHPGTAVSFE-DWFNKMHSQDSHLQ 63
CP CKE+ H + +C ++T I IP ++ W + + + +
Sbjct: 298 CPSCKETVN---HLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWE 354
Query: 64 HRNSLTILETISTVLWHLWKARCDIIFRGTNLNQEHLISTIQSFLSIQTVNLKT----FM 119
+ L + +LW LWK R +++FRG N + ++ + L + +
Sbjct: 355 KASQL-----VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTK 409
Query: 120 PE-QPSTITQWCPPPQGYVKVNYDASWDKNTLITYIAIVISDHTG-TQLAKESLLTSSRT 177
P+ S+ +W PPP +VK N DA+W+++ I V+ + G + L ++
Sbjct: 410 PQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKS 469
Query: 178 IDEGESKACLLGIRWAQV----HDVKKIHFEGDSLNVTNFLKGRKNTVHWTS-KHVLKEA 232
+ E E +A +RWA + + FE DS + L N W S K +++
Sbjct: 470 VLEAELEA----MRWAVLSLSRFQYNYVIFESDSQVLIEIL---NNDEIWPSLKPTIQDL 522
Query: 233 RSIVSSFDSYAFLYVNRKFNSMAHNLATNS 262
+ ++S F F+++ R+ N++A +A S
Sbjct: 523 QRLLSQFTEVKFVFIPREGNTLAERVARES 552
>AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:1535561-1536226 FORWARD
LENGTH=221 | 201606
Length = 221
Score = 67.0 bits (162), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 18/221 (8%)
Query: 78 LWHLWKARCDIIFRGTNLNQEHLISTIQSFLS--------IQTVNLKTFMP---EQPSTI 126
+W LW++R ++F+ NL+ + + + + IQ++N T + ST
Sbjct: 1 MWRLWRSRNQLVFQHQNLSWQSTLKRAKDDVQEWENAQEYIQSLNHYTVREGCNNRESTH 60
Query: 127 TQWCPPPQGYVKVNYDASWDKNTLITYIAIVISDHTG-TQLAKESLLTSSRTIDEGESKA 185
+W PP G++K NYD S++ T T +I D G + A +++ + E E +A
Sbjct: 61 QKWEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALESELQA 120
Query: 186 CLLGIRWAQVHDVKKIHFEGDSLNVTNFLKGRKNTVHWTSKHVLKEARSIVSSFDSYAFL 245
++ ++ +K+ FEGDS V L + +H+ + + ++EA S F+ F
Sbjct: 121 LVMAMQHTWSQGYRKVIFEGDSKQVEELLN--RKQMHFGAFNWIREAWSWSKRFEEVIFS 178
Query: 246 YVNRKFNSMAHNLATNSRKNSASVSTCF--PNCSTS--HCN 282
+ R N A LA + S + PN T+ HCN
Sbjct: 179 WTPRTNNQPADMLAKSHLPQDTSFIYHYFVPNFITNALHCN 219
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 113/273 (41%), Gaps = 30/273 (10%)
Query: 4 ITPLCPICKESCETPIHFIQECKVTIEIVKFFIPTLNHPGTAVSFEDWFNKMHSQDSHLQ 63
I P CP C E+ H + C + +L N++ S D
Sbjct: 196 IDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIR-----------NQLMSNDFEEN 244
Query: 64 HRNSLTILETIST----------VLWHLWKARCDIIFRGTNLNQEHLISTIQS----FLS 109
N L ++ + ++W +WKAR +++F + + + ++ +L+
Sbjct: 245 ISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLN 304
Query: 110 IQTVNLKTFMPEQ--PSTITQWCPPPQGYVKVNYDASWDKNTLITYIAIVISDHTGTQLA 167
+ KT P + +W PP YVK N+DA +D L +I +H GT ++
Sbjct: 305 ATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPIS 364
Query: 168 KESL-LTSSRTIDEGESKACLLGIRWAQVHDVKKIHFEGDSLNVTNFLKGRKNTVHWTSK 226
S+ L + E E+KA L ++ + ++ EGD + N + G + H +
Sbjct: 365 WGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGI--SFHSSLA 422
Query: 227 HVLKEARSIVSSFDSYAFLYVNRKFNSMAHNLA 259
+ L++ + F S F ++ RK N +AH LA
Sbjct: 423 NHLEDISFWANKFASIQFGFIRRKGNKLAHVLA 455
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 115/267 (43%), Gaps = 18/267 (6%)
Query: 6 PLCPICKESCETPIHFIQECKVTIEIVKF-FIPTLNHPGTAVSFEDWFNKMHSQDSHLQH 64
P C C + ET H +C ++ + IP T ++ E KM S
Sbjct: 54 PQCHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITME---TKMELLLSSCLA 110
Query: 65 RNSLTILETISTVLWHLWKARCDIIFRGTNLNQEHLISTIQSFLS--------IQTVNLK 116
+ +LW LWK+R ++F+ +++ ++ + ++ + +Q++N +
Sbjct: 111 NRQPQLFNLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQ 170
Query: 117 TFMP--EQPSTI-TQWCPPPQGYVKVNYDASWDKNTLITYIAIVISDHTGTQLAKESLLT 173
+QP+ T+W PP ++K NYD +++ T ++ D G + +
Sbjct: 171 VHSSRHQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIG 230
Query: 174 SSRTID-EGESKACLLGIRWAQVHDVKKIHFEGDSLNVTNFLKGRKNTVHWTSKHVLKEA 232
S+ + E E +A ++ ++ A +K+ FEGDS V + K +++ + ++E
Sbjct: 231 STTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDSKQVEELMNNEK--LNFGRFNWIREG 288
Query: 233 RSIVSSFDSYAFLYVNRKFNSMAHNLA 259
R F+ F +V R N A LA
Sbjct: 289 RFWQKRFEEAVFKWVPRTNNQPADILA 315
>AT2G13980.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:5869853-5870368 REVERSE
LENGTH=171 | 201606
Length = 171
Score = 61.2 bits (147), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 8/148 (5%)
Query: 127 TQWCPPPQGYVKVNYDASWDKNTLITYIAIVISDHTGTQLAKESL-LTSSRTIDEGESKA 185
T+W PP ++K NYDA ++ L + +I +H G SL L ++ T E E+KA
Sbjct: 11 TKWKAPPDTHIKCNYDAGFNVQNLDSTARWIIRNHDGIAQHWGSLQLDNTSTPLEAETKA 70
Query: 186 CLLGIRWAQVHDVKKIHFEGDSLNVTNFLKGRKNTVHWTSKHVLKEARSIVSSFDSYAFL 245
L ++ + ++ EGD +TN + G + H ++L + R F + F
Sbjct: 71 LLAALQQTWIRGYLRVIMEGDCETLTNLVSGSSSHNH--LANLLDDIRIWAKKFSNVQFS 128
Query: 246 YVNRKFNSMAHNLATNSRKNSASVSTCF 273
+V R N +AH LA STCF
Sbjct: 129 FVRRGGNKVAHELA-----KLGCNSTCF 151