BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g1120.1
(91 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31970.1 | DEA(D/H)-box RNA helicase family protein | Chr1:11... 84 3e-20
AT1G55150.2 | DEA(D/H)-box RNA helicase family protein | Chr1:20... 53 2e-09
AT1G55150.1 | DEA(D/H)-box RNA helicase family protein | Chr1:20... 53 2e-09
AT5G63120.5 | P-loop containing nucleoside triphosphate hydrolas... 49 5e-08
AT5G63120.4 | P-loop containing nucleoside triphosphate hydrolas... 49 5e-08
>AT1G31970.1 | DEA(D/H)-box RNA helicase family protein |
Chr1:11479921-11482707 FORWARD LENGTH=537 | 201606
Length = 537
Score = 83.6 bits (205), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 61/88 (69%), Gaps = 7/88 (7%)
Query: 1 MDPNPVKVVVGSEDLAGNHDLMQIVEVLDDIACGARLITLLDKSKVTE-----YWYLFCI 55
MDPNP+KV++GS DLA NHD+MQI+EVLD+ A RLI LL+K ++ + L+ +
Sbjct: 318 MDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKV 377
Query: 56 RRKQVLSKICLHHRGWEVVSVHGDKAQS 83
+++ + L RGW+ VS+HG+KAQS
Sbjct: 378 EAERL--ERFLQQRGWKAVSIHGNKAQS 403
>AT1G55150.2 | DEA(D/H)-box RNA helicase family protein |
Chr1:20574749-20577141 FORWARD LENGTH=526 | 201606
Length = 526
Score = 52.8 bits (125), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 25/96 (26%)
Query: 4 NPVKVVVGSEDLAGNHDLMQIVEV-------------LDDIACGARLITLLDKSKVTEYW 50
NP KV++GS DL N + QIV+V L+DI G+R++ LD K +
Sbjct: 326 NPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQ- 384
Query: 51 YLFCIRRKQVLSKICLHHRGWEVVSVHGDKAQSTTD 86
I R+ L GW +S+HGDK+Q+ D
Sbjct: 385 ----ITRQ-------LRMDGWPALSIHGDKSQAERD 409
>AT1G55150.1 | DEA(D/H)-box RNA helicase family protein |
Chr1:20574634-20577141 FORWARD LENGTH=501 | 201606
Length = 501
Score = 52.8 bits (125), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 25/96 (26%)
Query: 4 NPVKVVVGSEDLAGNHDLMQIVEV-------------LDDIACGARLITLLDKSKVTEYW 50
NP KV++GS DL N + QIV+V L+DI G+R++ LD K +
Sbjct: 301 NPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQ- 359
Query: 51 YLFCIRRKQVLSKICLHHRGWEVVSVHGDKAQSTTD 86
I R+ L GW +S+HGDK+Q+ D
Sbjct: 360 ----ITRQ-------LRMDGWPALSIHGDKSQAERD 384
>AT5G63120.5 | P-loop containing nucleoside triphosphate hydrolases
superfamily protein | Chr5:25319911-25322071 REVERSE
LENGTH=482 | 201606
Length = 482
Score = 48.9 bits (115), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 4 NPVKVVVGSEDLAGNHDLMQIVEVLDDIACGARLITLL----DKSKVTEYWYLFCIRRKQ 59
+P K ++GS DL N + Q++E++ RL+TLL D SK+ L + K+
Sbjct: 367 DPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKI-----LIFVETKR 421
Query: 60 VLSKICLHHR--GWEVVSVHGDKAQSTTD 86
++ R GW +++HGDK QS D
Sbjct: 422 GCDQVTRQLRMDGWPALAIHGDKTQSERD 450
>AT5G63120.4 | P-loop containing nucleoside triphosphate hydrolases
superfamily protein | Chr5:25319911-25322071 REVERSE
LENGTH=482 | 201606
Length = 482
Score = 48.9 bits (115), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 4 NPVKVVVGSEDLAGNHDLMQIVEVLDDIACGARLITLL----DKSKVTEYWYLFCIRRKQ 59
+P K ++GS DL N + Q++E++ RL+TLL D SK+ L + K+
Sbjct: 367 DPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKI-----LIFVETKR 421
Query: 60 VLSKICLHHR--GWEVVSVHGDKAQSTTD 86
++ R GW +++HGDK QS D
Sbjct: 422 GCDQVTRQLRMDGWPALAIHGDKTQSERD 450