BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g1140.1
(1095 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 166 4e-43
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 166 4e-43
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 163 1e-41
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 158 3e-39
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 142 2e-35
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 166 bits (419), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 130/506 (25%), Positives = 216/506 (42%), Gaps = 37/506 (7%)
Query: 561 INHLQFADDTLFFIEEDANQLRRLRDILIWYELASGLKVNMHKSFIYSATKVDEDNMNQD 620
I HL FADD L F + + + + I + SGL++++ KS IY A D D D
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDK--AD 65
Query: 621 MIKEFGCQVGSLPTTYLGLPLGESYKSKKLWDPVLERINKRLAAWKGHLLSKGGKITLLK 680
++ F G+LP YLGLPL + + P++E+I R+ W LS G++ L+
Sbjct: 66 ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLIS 125
Query: 681 SVLQALPTYYLSLFSIPKGVLKVIDSKMCSFQWNKTMGSKSMHWVNWNLVSTSRSKGGMG 740
SV+ +L +++S F +P +K IDS SF W+ + V W+ V T + +GG+G
Sbjct: 126 SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLG 185
Query: 741 VKNLEYMNQALLTKWLWRMDQDRNQLWQKVISSKYGSNSDLWIRKCKNTSFGCGVWKGIV 800
+++L+ N+ L K +WRM LW + + W NT+ G +WK I+
Sbjct: 186 IRSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFW-SISGNTTLGSWMWKKIL 243
Query: 801 AHLKEYHKITRWALGDGRKIKFWTDKW--IGSNSLSLSFPDIFRVAVRPLATVAEVYNNE 858
H + + +G FW D W IG + + A+VAE N
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNH 303
Query: 859 SKSWDIVLRRNLNDWELQQYVHMLQILQEANLLDEPDSRVW-CNGESEPLSVANCYKRLD 917
RR+ +D L + ++ ++ L D+ W NG+ C+ +
Sbjct: 304 RP------RRHRHD-TLLRIEDVIAEVRHQGLTSGEDTVRWKGNGD----IFKPCFNTKE 352
Query: 918 DGGTILEPCVS----KSVWIKAIPPRVGFFIWAILVQKVPTVDALKRRGFQAPNRCILCK 973
EP + K VW P+ W + ++ T D + A + C+LC
Sbjct: 353 TWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCH 412
Query: 974 EEEESADHLFLHCRVAAGIWKYFAKLMATQWCHPESIHNMIIQWDGLAKRKHRKEVWQLI 1033
E+ DHLF C +A +W + + +Q + +W+ + K K + +
Sbjct: 413 HLVETRDHLFFTCPYSAEVWSTLTRKLLSQ--------HFTNRWEAILKLLTNKSLGHEV 464
Query: 1034 P-------AAIVWSIWHDRNSKIFKE 1052
P + S+W +RN + E
Sbjct: 465 PFLTRYTFQLTLHSLWKERNGRRHGE 490
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 166 bits (419), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 130/506 (25%), Positives = 216/506 (42%), Gaps = 37/506 (7%)
Query: 561 INHLQFADDTLFFIEEDANQLRRLRDILIWYELASGLKVNMHKSFIYSATKVDEDNMNQD 620
I HL FADD L F + + + + I + SGL++++ KS IY A D D D
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDK--AD 65
Query: 621 MIKEFGCQVGSLPTTYLGLPLGESYKSKKLWDPVLERINKRLAAWKGHLLSKGGKITLLK 680
++ F G+LP YLGLPL + + P++E+I R+ W LS G++ L+
Sbjct: 66 ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLIS 125
Query: 681 SVLQALPTYYLSLFSIPKGVLKVIDSKMCSFQWNKTMGSKSMHWVNWNLVSTSRSKGGMG 740
SV+ +L +++S F +P +K IDS SF W+ + V W+ V T + +GG+G
Sbjct: 126 SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLG 185
Query: 741 VKNLEYMNQALLTKWLWRMDQDRNQLWQKVISSKYGSNSDLWIRKCKNTSFGCGVWKGIV 800
+++L+ N+ L K +WRM LW + + W NT+ G +WK I+
Sbjct: 186 IRSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFW-SISGNTTLGSWMWKKIL 243
Query: 801 AHLKEYHKITRWALGDGRKIKFWTDKW--IGSNSLSLSFPDIFRVAVRPLATVAEVYNNE 858
H + + +G FW D W IG + + A+VAE N
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNH 303
Query: 859 SKSWDIVLRRNLNDWELQQYVHMLQILQEANLLDEPDSRVW-CNGESEPLSVANCYKRLD 917
RR+ +D L + ++ ++ L D+ W NG+ C+ +
Sbjct: 304 RP------RRHRHD-TLLRIEDVIAEVRHQGLTSGEDTVRWKGNGD----IFKPCFNTKE 352
Query: 918 DGGTILEPCVS----KSVWIKAIPPRVGFFIWAILVQKVPTVDALKRRGFQAPNRCILCK 973
EP + K VW P+ W + ++ T D + A + C+LC
Sbjct: 353 TWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCH 412
Query: 974 EEEESADHLFLHCRVAAGIWKYFAKLMATQWCHPESIHNMIIQWDGLAKRKHRKEVWQLI 1033
E+ DHLF C +A +W + + +Q + +W+ + K K + +
Sbjct: 413 HLVETRDHLFFTCPYSAEVWSTLTRKLLSQ--------HFTNRWEAILKLLTNKSLGHEV 464
Query: 1034 P-------AAIVWSIWHDRNSKIFKE 1052
P + S+W +RN + E
Sbjct: 465 PFLTRYTFQLTLHSLWKERNGRRHGE 490
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 163 bits (413), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/413 (29%), Positives = 195/413 (47%), Gaps = 16/413 (3%)
Query: 7 LVAAKWDKPWCLGGDFNVIRFIHEKRGNCNVTPAMR---DFGEWIDRNSLLDLPKQGLEF 63
LV K D+ L GDF+ I + + MR +F + + L+D+P +G+ +
Sbjct: 212 LVFKKTDQLMILVGDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHY 271
Query: 64 TWSNNQDD-PVMCVLDRFLINGMWEDKFPGVEQIVLPRPTSDHTP--IILRTAPDHSNPP 120
TWSN+QDD P++ LDR + NG W FP + SDH+P IIL P S
Sbjct: 272 TWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGVSDHSPCIIILENLPKRSKKC 331
Query: 121 PFRLEEVWMLDKDFKCNIATWWEEA-PVGSTAGHTLWLKFQFLKDKLKSWSREKFRCFSK 179
FR F ++ WEE PVGS +L + K K +R+ F
Sbjct: 332 -FRYFSFLSTHPTFLVSLTVAWEEQIPVGSHM-FSLGEHLKAAKKCCKLLNRQGFGNIQH 389
Query: 180 NFSDLQKAIQELDDKEVTQNLSQQELTSKKCLKAEMDKLLSLEEISMRQKSRTQWLEAGD 239
+ +++ + + +T N S + + + + + E RQKSR +WL+ GD
Sbjct: 390 KTKEALDSLESIQSQLLT-NPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGD 448
Query: 240 RNTSYFHKIIKCRRRQNRISVI-MKDDVVISDEGEISQEAISYFSNLY-EEPRLWRPG-- 295
NT +FHK+I + +N I + M DDV + + ++ + ++Y+++L + + P
Sbjct: 449 ANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSV 508
Query: 296 --LNNMHLPSLSGIEANSLEADITEEEVSNAIKEMAKDKAPGPDGFPISFFVRVWDIIKP 353
+ ++H + A+ L A +++E++ A+ M ++KAPGPD F FF W ++K
Sbjct: 509 QRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKD 568
Query: 354 LFMEMVAEFSEGALFQWRLNHTFIVLIPKIQNSSRFQEFRPISLVGGAYKIVA 406
+ V EF R N T I LIPK+ + FRP+S YKI+
Sbjct: 569 STIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/438 (26%), Positives = 191/438 (43%), Gaps = 20/438 (4%)
Query: 561 INHLQFADDTLFFIEEDANQLRRLRDILIWYELASGLKVNMHKSFIYSATKVDEDNMNQD 620
I HL FADD L F + + + + I + SGL++++ KS IY A +DN D
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGV--KDNDKAD 65
Query: 621 MIKEFGCQVGSLPTTYLGLPLGESYKSKKLWDPVLERINKRLAAWKGHLLSKGGKITLLK 680
++ F G+LP YLGLPL + + P++E+I R+ W LS G++ L+
Sbjct: 66 ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLIS 125
Query: 681 SVLQALPTYYLSLFSIPKGVLKVIDSKMCSFQWNKTMGSKSMHWVNWNLVSTSRSKGGMG 740
SV+ +L +++S F +P +K IDS SF W+ + V W+ V T + +GG+G
Sbjct: 126 SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLG 185
Query: 741 VKNLEYMNQALLTKWLWRMDQDRNQLWQKVISSKYGSNSDLWIRKCKNTSFGCGVWKGIV 800
+++L+ N+ L K +WRM LW + + W NT+ G +WK I+
Sbjct: 186 IRSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFW-SISGNTTLGSWMWKKIL 243
Query: 801 AHLKEYHKITRWALGDGRKIKFWTDKW--IGSNSLSLSFPDIFRVAVRPLATVAEVYNNE 858
H + + +G FW D W IG + + A+VAE N
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNH 303
Query: 859 SKSWDIVLRRNLNDWELQQYVHMLQILQEANLLDEPDSRVWCNGESEPLSVANCYKRLDD 918
RR+ +D L+ + ++ + E R NG+ C+ +
Sbjct: 304 RP------RRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGD----IFKPCFNTKET 353
Query: 919 GGTILEPCVS----KSVWIKAIPPRVGFFIWAILVQKVPTVDALKRRGFQAPNRCILCKE 974
EP + K VW P+ W + ++ T D + A + C+LC
Sbjct: 354 WAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHH 413
Query: 975 EEESADHLFLHCRVAAGI 992
E+ DHLF C +A +
Sbjct: 414 LVETRDHLFFTCPYSAEV 431
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 142 bits (357), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/453 (24%), Positives = 190/453 (41%), Gaps = 35/453 (7%)
Query: 614 EDNMNQDMIKEFGCQVGSLPTTYLGLPLGESYKSKKLWDPVLERINKRLAAWKGHLLSKG 673
+DN D++ F G+LP YLGLPL + + P++E+I R+ W LS
Sbjct: 5 KDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFA 64
Query: 674 GKITLLKSVLQALPTYYLSLFSIPKGVLKVIDSKMCSFQWNKTMGSKSMHWVNWNLVSTS 733
G++ L+ SV+ +L +++S F +P +K IDS SF W+ + V W+ V T
Sbjct: 65 GRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTP 124
Query: 734 RSKGGMGVKNLEYMNQALLTKWLWRMDQDRNQLWQKVISSKYGSNSDLWIRKCKNTSFGC 793
+ +GG+G+++L+ N+ L K +WRM LW + + W NT+ G
Sbjct: 125 KDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFW-SISGNTTLGS 182
Query: 794 GVWKGIVAHLKEYHKITRWALGDGRKIKFWTDKW--IGSNSLSLSFPDIFRVAVRPLATV 851
+WK I+ H + + +G FW D W IG + + A+V
Sbjct: 183 WMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASV 242
Query: 852 AEVYNNESKSWDIVLRRNLNDWELQQYVHMLQILQEANLLDEPDSRVW-CNGESEPLSVA 910
AE N RR+ +D L + ++ ++ L D+ W NG+
Sbjct: 243 AEAVVNHRP------RRHRHD-TLLRIEDVIAEVRHQGLTSGEDTVRWKGNGD----IFK 291
Query: 911 NCYKRLDDGGTILEPCVS----KSVWIKAIPPRVGFFIWAILVQKVPTVDALKRRGFQAP 966
C+ + EP + K VW P+ W + ++ T D + A
Sbjct: 292 PCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGAD 351
Query: 967 NRCILCKEEEESADHLFLHCRVAAGIWKYFAKLMATQWCHPESIHNMIIQWDGLAKRKHR 1026
+ C+LC E+ DHLF C +A +W + + +Q + +W+ + K
Sbjct: 352 SSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQ--------HFTNRWEAILKLLTN 403
Query: 1027 KEVWQLIP-------AAIVWSIWHDRNSKIFKE 1052
K + +P + S+W +RN + E
Sbjct: 404 KSLGHEVPFLTRYTFQLTLHSLWKERNGRRHGE 436