BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g1180.1
(288 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00750.1 | GAG/POL/ENV polyprotein | ChrM:220830-221189 FORWA... 77 1e-17
>ATMG00750.1 | GAG/POL/ENV polyprotein | ChrM:220830-221189
FORWARD LENGTH=119 | 201606
Length = 119
Score = 77.4 bits (189), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 42/56 (75%)
Query: 32 ILQCGFYWPSIFKDAYQFCKACDRCQRVGCMTRRDMMPLNPILIVELFDVWGIDFM 87
+LQ GFYWP+ FKDA+ F +CD CQR G T+R+ MP + IL VE+FDVWGI FM
Sbjct: 35 VLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFM 90