BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g1190.1
(290 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 88 3e-21
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 88.2 bits (217), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 24 LHNLKCVLNRCIEMNLVLNWEKCHFMVSKGIVLGH--VVSSSGLEVDRAKIELISHLPIP 81
+++L VL + N +KC F + LGH ++S G+ D AK+E + P P
Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60
Query: 82 KSVKDIRSFLGHAGFYRRFIKDFSKISRPLCALLSKEKDFVFGDECMKAFDTLKTLLTTA 141
K+ ++R FLG G+YRRF+K++ KI RPL LL K+ + + AF LK +TT
Sbjct: 61 KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELL-KKNSLKWTEMAALAFKALKGAVTTL 119
Query: 142 PIIQPPDWSIPF 153
P++ PD +PF
Sbjct: 120 PVLALPDLKLPF 131