BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g1290.1
(291 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 89 5e-20
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 62 5e-12
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 89.4 bits (220), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 55/85 (64%)
Query: 52 LANRLKLVLPEIISPFQAAFVPGRQITDNIIISQELSHSFKRKKGAKSYFGLKLDMSKAF 111
+ RLK ++ +I P QA+F+PGR TDNI+ QE HS +RKKG K + LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 112 DRVEWSFLEKIMALLGFADHWINMI 136
DR+ W +LE + GF + W+ I
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEI 85
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 62.4 bits (150), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 38/70 (54%)
Query: 145 MAILINGRPGSNFNVSRGIRQGDPLSPFLFTLAMEGLSRLLESKNNQHHFIGFKFPKSDL 204
+ +ING P SRG+RQGDPLSP+LF L E LS L Q G + +
Sbjct: 10 LLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSP 69
Query: 205 TITHLLFADD 214
I HLLFADD
Sbjct: 70 RINHLLFADD 79