BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g1300.1
(520 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 160 8e-43
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 100 3e-22
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 86 5e-18
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 85 1e-17
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 59 4e-10
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 160 bits (406), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 150/560 (26%), Positives = 250/560 (44%), Gaps = 80/560 (14%)
Query: 1 MQCFVIPKGVSNRIETLQRSFWW---GKSKTIHTINWLQIYRPRHLGGLGIRLPALDNEA 57
M CF++PK V +I ++ FWW ++K +H W + + GG+G + N A
Sbjct: 8 MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67
Query: 58 FLSKLIWRSITNPQALWAKVLKAKYYPK-DIKPRMARNHHSWFWKSMMQRFNQVHALLFW 116
L K +WR ++ P++L AKV K++Y+ K D + S+ WKS+ +
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127
Query: 117 DVNKGTNINIWEDYWIPN----------HRPPLANINQCSLQTVDQLI--TNNQWNMKIL 164
V G +I IW W+ + PP + S+ V LI + +W ++
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187
Query: 165 HRYFTNEISGAISSINIQQGGG---DSLKWTLTKSGKFSIKSMYFYL------RTKDHDW 215
F I ++ GG DS W T SG +++KS Y+ L R+ +
Sbjct: 188 EMLFPEVERKLIG--ELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEV 245
Query: 216 APPEWN----HIWKIQTIPRIKLFLWKCCTDSLPVRRRIG-QYIGNVTNCTFSERV-ETL 269
+ P N IWK QT P+I+ FLWKC ++SLPV + +++ + C ET+
Sbjct: 246 SEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETV 305
Query: 270 THVMLHCSFTRTIWFHFNIRV-------DSIT-------NLQDWIKEWKTVDLERQSLYA 315
H++ C+F R W +I + DSI NL + +W+ L
Sbjct: 306 NHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKAS----QLVP 361
Query: 316 KILWFIWKARCDRVFTSKIQNPVQVINSIQGS-------SFSPYSSTKLPLNKHPPS-WV 367
+LW +WK R + VF + N +V+ + + + TK +N+ W
Sbjct: 362 WLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWR 421
Query: 368 PPESPFLKCNVDASFKTLHEPAGYGGIIHDDKAEFIIAKAGEIRGQTAEECEGL-----A 422
PP ++KCN DA++ +E G G ++ ++K GE++ A L A
Sbjct: 422 PPPHQWVKCNTDATWNRDNERCGIGWVLRNEK--------GEVKWMGARALPKLKSVLEA 473
Query: 423 ILRAMEWA----AQLQISHLHIESDNQNIITFINYGGRALDWQTEK-IMGSISELKNQFV 477
L AM WA ++ Q +++ ESD+Q +I +N W + K + + L +QF
Sbjct: 474 ELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDE---IWPSLKPTIQDLQRLLSQFT 530
Query: 478 AIRFTHISRECNKWADKLAK 497
++F I RE N A+++A+
Sbjct: 531 EVKFVFIPREGNTLAERVAR 550
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 110/465 (23%), Positives = 194/465 (41%), Gaps = 50/465 (10%)
Query: 78 LKAKYYPKDIKPRMA--RNHHSWFWKSMMQRFNQVHALLFWDVNKGTNINIWEDYWIPNH 135
+KA+Y+ KD+ A R S+ W S++ + + G NI I D + +H
Sbjct: 1 MKARYF-KDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSH 59
Query: 136 RP-PLANINQCSLQTVDQLITNNQ----WNMKILHRYFTNEISGAISSINIQQGGG-DSL 189
P PL T++ L W+ + ++ G I I + + D +
Sbjct: 60 PPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKI 119
Query: 190 KWTLTKSGKFSIKSMYFYLRTKDHDWAPPEWN----------HIWKIQTIPRIKLFLWKC 239
W +G+++++S Y +L T D P N IW + +P++K FLW+
Sbjct: 120 IWNYNTTGEYTVRSGY-WLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRA 178
Query: 240 CTDSLPVRRRIGQYIGNVT-NCTFSERV-ETLTHVMLHCSFTRTIW-----------FHF 286
+ +L R+ + +C R E++ H + C F W
Sbjct: 179 LSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMS 238
Query: 287 NIRVDSITNLQDWIKEWKTVDLERQSLYAKILWFIWKARCDRVFTSKIQNPVQVI----- 341
N ++I+N+ +++++ D + L ++W IWKAR + VF ++P + +
Sbjct: 239 NDFEENISNILNFVQDTTMSDFHKL-LPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKA 297
Query: 342 ------NSIQGSSFSPYSSTKLPLNKHPPSWVPPESPFLKCNVDASFKTLHEPAGYGGII 395
N+ Q +P + ++ NK W P + ++KCN DA F A G II
Sbjct: 298 ETHDWLNATQSHKKTPSPTRQIAENK--IEWRNPPATYVKCNFDAGFDVQKLEATGGWII 355
Query: 396 HDDKAEFIIAKAGEIRGQTAE-ECEGLAILRAMEWAAQLQISHLHIESDNQNIITFINYG 454
+ I + ++ + E E A+L A++ + + +E D Q +I IN
Sbjct: 356 RNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLIN-- 413
Query: 455 GRALDWQTEKIMGSISELKNQFVAIRFTHISRECNKWADKLAKWG 499
G + + IS N+F +I+F I R+ NK A LAK+G
Sbjct: 414 GISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKYG 458
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 131/292 (44%), Gaps = 31/292 (10%)
Query: 229 IPRIKLFLWKCCTDSLPV-RRRIGQYIGNVTNCTFSERVETLTHVMLHCSFTRTIWFHFN 287
+P+IKLFLWK +LPV + + ++I + +C ET TH++ HC F +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 288 IRVDSI---------TNLQDWIKEWKTVDLERQSLYAKILWFIWKARCDRVFTSKIQNPV 338
+++ I NL V + +L+ I W IWKAR +F + + +
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSVI 120
Query: 339 QVINSIQGSSFSPYSSTKLPLNK------HPPSWVPPESPFLKCNVDASFKTLHEPAGYG 392
+ + + + + S +L L K P S FL C VDA+++ AG G
Sbjct: 121 ETVTKAVQDALA-WQSAQLALPKVRVATPRPNSTTTLTHDFL-CYVDAAWQQQSSLAGSG 178
Query: 393 GII----HDDKAEFIIAKAGEIRGQTAEECEGLAILRAMEWAAQLQISHLHIESDNQNII 448
+ H +K E AG R + E AI AM A QL+ S L + SD+++I+
Sbjct: 179 WVFQATSHSEK-EITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIV 237
Query: 449 TFINYGGRALDWQTEKIMGSISE---LKNQFVAIRFTHISRECNKWADKLAK 497
+N + +I G + E ++N+F +I F I R N AD AK
Sbjct: 238 DALNS-----NVSLNEIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAK 284
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 145/326 (44%), Gaps = 53/326 (16%)
Query: 223 IWKIQTIPRIKLFLWKCCTDSLPVRRRIGQYIGNVTNCTFSERV----ETLTHVMLHCSF 278
IWK+ P+IK FLW+C T +L R+ N+ +R ET+ H+M +C +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSR--NIDADPICQRCCIEEETIHHIMFNCPY 94
Query: 279 TRTIWFHFNIRV-----------DSITNLQDWIKEWKTVDLERQSLYAKILWFIWKARCD 327
T+++W NI + D++ L K T L+R L I+W +WK+R
Sbjct: 95 TQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDR-FLPFWIMWRLWKSRNV 153
Query: 328 RVFTSKIQNP-VQVINSIQGSSF-----SPYSSTKLPLNKHP--------PSWVPPESPF 373
+F K Q+P + IQ ++ +T + + +P W PP +
Sbjct: 154 FLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGW 213
Query: 374 LKCNVDASFKTLHEPAGYGGIIHDDKAEFIIAKAGEIRGQTAE-ECEGLAILRAME--WA 430
+KCN D+ + G I + ++ +++ T E L L A++ WA
Sbjct: 214 VKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWA 273
Query: 431 AQLQISHLHIESDNQNIITFINYGGRALDWQTEKIMGSIS------ELKNQFVAIRFTHI 484
L+ ++ ESD+++++T IN G + ++G++ LK + ++ F +
Sbjct: 274 HGLR--YVWFESDSKSLVTLINNG------EDHSLLGTLIYDIRHWMLKLPYCSLEF--V 323
Query: 485 SRECNKWADKLAKWGRVHNRSKIWNA 510
+RE N AD LA VH R ++ +
Sbjct: 324 NRERNSAADALA--SHVHARDPLFQS 347
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 58.9 bits (141), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 1 MQCFVIPKGVSNRIETLQRSFWWGKSKTIHTINWLQ----IYRPRHLGGLGIRLPALDNE 56
M CF + K + ++ + FWW + I+W+ GGLG R N+
Sbjct: 8 MSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQ 67
Query: 57 AFLSKLIWRSITNPQALWAKVLKAKYYP-KDIKPRMARNHHSWFWKSMMQRFNQVHALLF 115
A L+K +R I P L +++L+++Y+P + S+ W+S++ + L
Sbjct: 68 ALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLL 127
Query: 116 WDVNKGTNINIWEDYWIPNHRP 137
+ G + +W D WI + P
Sbjct: 128 RTIGDGIHTKVWLDRWIMDETP 149