BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g1610.1
(1070 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 131 2e-31
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 103 2e-22
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 103 2e-22
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 100 3e-21
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 91 2e-19
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/504 (25%), Positives = 202/504 (40%), Gaps = 75/504 (14%)
Query: 634 AVPRYQMQCFALPKGISDSIESLQRTFWW---GKSKTFHTINWQSICKPRKHGGLGLCLP 690
A+P Y M CF LPK + I S+ FWW ++K H W + + GG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 691 QLDNQAFLNKLNWRLTNGGMLFGYKCLKIESL---------------IFWN--------- 726
+ N A L K WR+ + K K W
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 727 -------INRGEHINIWNDYWIPNHPR---------PITNYNGCT-LEKVSQLI--TNGM 767
+ GE I IW W+ + P P Y + + KVS LI +
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 768 WNLNVINTCFNNDICSAILSISIQPNQE---DKAVWTLTKSGNFSLKSMYNYLRTNI-AY 823
W +VI F L ++P D W T SG++++KS Y L I
Sbjct: 182 WRKDVIEMLFPE--VERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKR 239
Query: 824 TVPDQID-------WFFIWNMNTLPRIKLFVWKCCTNSLPVKAKIG-KFIGNTYSCVNCN 875
+ P ++ + IW T P+I+ F+WKC +NSLPV + + + +C+ C
Sbjct: 240 SSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCP 299
Query: 876 E-DETLDHVMLHCTFAKAVWFHYQVK-------TDHITTIIQWI---QQWKPLEEETINL 924
ET++H++ CTFA+ W + D I + W+ P E+ L
Sbjct: 300 SCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQL 359
Query: 925 YAKILWFIWKARCENCFSTNKQNPLQMIERINNTTTT---PLKNESSITTKCREKTKIQT 981
+LW +WK R E F + N +++ R + + ES T ++
Sbjct: 360 VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR 419
Query: 982 WRPSSTPYLKINVDASFVSLNEPAGIGCIIRDAEANY-IIAATDTVRGQHAEECESLAIL 1040
WRP ++K N DA++ NE GIG ++R+ + + A + + E E A+
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479
Query: 1041 SSLLWAIQLQISHVHLKSDNQALI 1064
++L + Q ++V +SD+Q LI
Sbjct: 480 WAVLSLSRFQYNYVIFESDSQVLI 503
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/429 (23%), Positives = 173/429 (40%), Gaps = 49/429 (11%)
Query: 511 IKHLLFADDCIIFGQNSLDNIFNRKQILKEFSEASGQMINYAKSNIFFSKNSHHEFKRMI 570
I HL FADD ++F +I QI +F++ SG I+ KS I+ + ++ K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDND-KADI 66
Query: 571 IRELKVHQSSSDDKYLGTNLFIDRNKKQAFSSLLTQIKNKLAKWQTHLLSQAGRSVVLST 630
+ + +YLG L + + L+ +I+ ++ KW LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 631 IAAAVPRYQMQCFALPKGISDSIESLQRTFWWGKSK---TFHTINWQSICKPRKHGGLGL 687
+ ++ + M F LP I+S+ +F W + + W +C P+ GGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 688 CLPQLDNQAFLNKLNWRL---------------------------TNGGMLFGYKCLKIE 720
+ N+ L KL WR+ T G K LK
Sbjct: 187 RSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 721 SL----IFWNINRGEHINIWNDYWIP-NHPRPITNYNGC-----TLE-KVSQLITNGMWN 769
+L + +I+ G + + W D W +T + GC TL V++ + N
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPR 306
Query: 770 LNVINTCFNNDICSAILSISIQPNQEDKAVWTLTKSGNFSLKSMYNYLRTNIAYTVPD-Q 828
+ +T + A + + ED W K K +N T A P +
Sbjct: 307 RHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW---KGNGDIFKPCFNTKETWAATREPKLK 363
Query: 829 IDWF-FIWNMNTLPRIKLFVWKCCTNSLPVKAKIGKF-IGNTYSCVNCNE-DETLDHVML 885
++W+ +W + P+ + W N L ++ + G SCV C+ ET DH+
Sbjct: 364 VNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFF 423
Query: 886 HCTFAKAVW 894
C ++ VW
Sbjct: 424 TCPYSAEVW 432
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/429 (23%), Positives = 173/429 (40%), Gaps = 49/429 (11%)
Query: 511 IKHLLFADDCIIFGQNSLDNIFNRKQILKEFSEASGQMINYAKSNIFFSKNSHHEFKRMI 570
I HL FADD ++F +I QI +F++ SG I+ KS I+ + ++ K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDND-KADI 66
Query: 571 IRELKVHQSSSDDKYLGTNLFIDRNKKQAFSSLLTQIKNKLAKWQTHLLSQAGRSVVLST 630
+ + +YLG L + + L+ +I+ ++ KW LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 631 IAAAVPRYQMQCFALPKGISDSIESLQRTFWWGKSK---TFHTINWQSICKPRKHGGLGL 687
+ ++ + M F LP I+S+ +F W + + W +C P+ GGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 688 CLPQLDNQAFLNKLNWRL---------------------------TNGGMLFGYKCLKIE 720
+ N+ L KL WR+ T G K LK
Sbjct: 187 RSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 721 SL----IFWNINRGEHINIWNDYWIP-NHPRPITNYNGC-----TLE-KVSQLITNGMWN 769
+L + +I+ G + + W D W +T + GC TL V++ + N
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPR 306
Query: 770 LNVINTCFNNDICSAILSISIQPNQEDKAVWTLTKSGNFSLKSMYNYLRTNIAYTVPD-Q 828
+ +T + A + + ED W K K +N T A P +
Sbjct: 307 RHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW---KGNGDIFKPCFNTKETWAATREPKLK 363
Query: 829 IDWF-FIWNMNTLPRIKLFVWKCCTNSLPVKAKIGKF-IGNTYSCVNCNE-DETLDHVML 885
++W+ +W + P+ + W N L ++ + G SCV C+ ET DH+
Sbjct: 364 VNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFF 423
Query: 886 HCTFAKAVW 894
C ++ VW
Sbjct: 424 TCPYSAEVW 432
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 173/430 (40%), Gaps = 49/430 (11%)
Query: 511 IKHLLFADDCIIFGQNSLDNIFNRKQILKEFSEASGQMINYAKSNIFFSKNSHHEFKRMI 570
I HL FADD ++F +I QI +F++ SG I+ KS I+ + ++ K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDND-KADI 66
Query: 571 IRELKVHQSSSDDKYLGTNLFIDRNKKQAFSSLLTQIKNKLAKWQTHLLSQAGRSVVLST 630
+ + +YLG L + + L+ +I+ ++ KW LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 631 IAAAVPRYQMQCFALPKGISDSIESLQRTFWWGKSK---TFHTINWQSICKPRKHGGLGL 687
+ ++ + M F LP I+S+ +F W + + W +C P+ GGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 688 CLPQLDNQAFLNKLNWRL---------------------------TNGGMLFGYKCLKIE 720
+ N+ L KL WR+ T G K LK
Sbjct: 187 RSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 721 SL----IFWNINRGEHINIWNDYWIP-NHPRPITNYNGC-----TLE-KVSQLITNGMWN 769
+L + +I+ G + + W D W +T + GC TL V++ + N
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPR 306
Query: 770 LNVINTCFNNDICSAILSISIQPNQEDKAVWTLTKSGNFSLKSMYNYLRTNIAYTVPD-Q 828
+ +T + A + + ED W K K +N T A P +
Sbjct: 307 RHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW---KGNGDIFKPCFNTKETWAATREPKLK 363
Query: 829 IDWF-FIWNMNTLPRIKLFVWKCCTNSLPVKAKIGKF-IGNTYSCVNCNE-DETLDHVML 885
++W+ +W + P+ + W N L ++ + G SCV C+ ET DH+
Sbjct: 364 VNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFF 423
Query: 886 HCTFAKAVWF 895
C ++ V F
Sbjct: 424 TCPYSAEVPF 433
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 22/245 (8%)
Query: 840 LPRIKLFVWKCCTNSLPVKAK-IGKFIGNTYSCVNCNEDETLDHVMLHCTFAKAVWFHYQ 898
+P+IKLF+WK +LPV A+ + + I +T+ C C ET H++ HC FA VW
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 899 VKTDHI---TTIIQWIQQWK------PLEEETINLYAKILWFIWKARCENCFSTNKQNPL 949
++ HI T I++ + K P+ T L+ I W IWKAR + F +
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSH---F 117
Query: 950 QMIERINNTTTTPLKNESSITTKCREKTKIQTWRPSSTPYLKIN----VDASFVSLNEPA 1005
+IE + L +S+ K ++ T RP+ST L + VDA++ + A
Sbjct: 118 SVIETVTKAVQDALAWQSA--QLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLA 175
Query: 1006 GIGCIIR---DAEANYIIAATDTVRGQHAEECESLAILSSLLWAIQLQISHVHLKSDNQA 1062
G G + + +E + R E+ AI S++L A+QL+ S + + SD+++
Sbjct: 176 GSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKS 235
Query: 1063 LILSL 1067
++ +L
Sbjct: 236 IVDAL 240