BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g1620.1
(127 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12500.1 | basic chitinase | Chr3:3962501-3963984 REVERSE LEN... 57 2e-10
>AT3G12500.1 | basic chitinase | Chr3:3962501-3963984 REVERSE
LENGTH=335 | 201606
Length = 335
Score = 57.4 bits (137), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 18 SQCGTQAGGSMCKDGLCCSKWGYCGNSTAYCDQINCQSQC 57
QCG QAGG++C +GLCCS++G+CGN+ YC Q CQSQC
Sbjct: 34 EQCGRQAGGALCPNGLCCSEFGWCGNTEPYCKQPGCQSQC 73
Score = 54.3 bits (129), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 64 ECGRQAGGAKCKDDLCCSNWGFCGNTDSYCYEANCQNQC 102
+CGRQAGGA C + LCCS +G+CGNT+ YC + CQ+QC
Sbjct: 35 QCGRQAGGALCPNGLCCSEFGWCGNTEPYCKQPGCQSQC 73