BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000093.1_g1620.1
         (127 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12500.1 | basic chitinase | Chr3:3962501-3963984 REVERSE LEN...    57   2e-10

>AT3G12500.1 | basic chitinase | Chr3:3962501-3963984 REVERSE
          LENGTH=335 | 201606
          Length = 335

 Score = 57.4 bits (137), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 18 SQCGTQAGGSMCKDGLCCSKWGYCGNSTAYCDQINCQSQC 57
           QCG QAGG++C +GLCCS++G+CGN+  YC Q  CQSQC
Sbjct: 34 EQCGRQAGGALCPNGLCCSEFGWCGNTEPYCKQPGCQSQC 73



 Score = 54.3 bits (129), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query: 64  ECGRQAGGAKCKDDLCCSNWGFCGNTDSYCYEANCQNQC 102
           +CGRQAGGA C + LCCS +G+CGNT+ YC +  CQ+QC
Sbjct: 35  QCGRQAGGALCPNGLCCSEFGWCGNTEPYCKQPGCQSQC 73


Top