BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g1630.1
(306 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 91 6e-20
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 80 9e-17
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 72 6e-14
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 71 1e-13
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 67 1e-12
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 90.5 bits (223), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 146/330 (44%), Gaps = 45/330 (13%)
Query: 1 MEPNWNFIWSIQVVPRIKLFLWKICVKALPVRERIG-KYIDNN---LNCPNCNVVESMEH 56
+ P + IW Q P+I+ FLWK +LPV + +++ + CP+C E++ H
Sbjct: 250 LNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK--ETVNH 307
Query: 57 ALLHYPLAKNIWFYFNFISEQIPSIRDWIFS------W-----EQNPELNQTHNGFHVAT 105
L A+ W S IP +W S W NP+ + V
Sbjct: 308 LLFKCTFARLTW---AISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQ--LVPW 362
Query: 106 IMWIIWKIRCDHCFQ-HEINSLDQIISIITNFPQYKQKSHNRT--------KMVPDRWTP 156
++W +WK R + F+ E N+ + + + +++ ++ + + RW P
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRP 422
Query: 157 PIQDWVKINVDASFNNINETAGIGIVIHNHASEFI-EAYVTTTRSRSAEECESLAILMEW 215
P WVK N DA++N NE GIG V+ N E + +S E E A M W
Sbjct: 423 PPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEA--MRW 480
Query: 216 AVAH----NYRKIIIENDNINVIQYLQKNRNEIQWQTKRNIQKIREIRSLTEAVKYSFVN 271
AV Y +I E+D+ +I+ L N +EI K IQ ++ + S VK+ F+
Sbjct: 481 AVLSLSRFQYNYVIFESDSQVLIEIL--NNDEIWPSLKPTIQDLQRLLSQFTEVKFVFIP 538
Query: 272 RKFNQVADKLAKWARKRKKISVMEEYPLLY 301
R+ N +A+++A R+ +S + P LY
Sbjct: 539 REGNTLAERVA-----RESLSFLNYDPKLY 563
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 80.1 bits (196), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 133/306 (43%), Gaps = 37/306 (12%)
Query: 8 IWSIQVVPRIKLFLWKICVKALPVRERIGK-YIDNNLNCPNC-NVVESMEHALLHYPLAK 65
IW ++ P+IK FLWK+ AL + + + +I N+ C C E+ +H A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 66 NIWFYFNFISEQIP--SIRDWIFSWEQNPEL-------NQTHNGFHVAT-IMWIIWKIRC 115
+W + IP +R + E EL N+ F++A I+W +WK R
Sbjct: 78 QVW-----RASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRN 132
Query: 116 DHCFQHEI----NSLDQIISIITNFP-----------QYKQKSHNRTKMVPDRWTPPIQD 160
FQ + N+L + + + + Q H + M +W P
Sbjct: 133 QLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPST 192
Query: 161 WVKINVDASFNNINETAGIGIVIHNHASEFI---EAYVTTTRSRSAEECESLAILMEWAV 217
W+K N D +FN+ A G ++ + ++ +A +TT E ++L I M+ A
Sbjct: 193 WIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAW 252
Query: 218 AHNYRKIIIENDNINVIQYLQKNRNEIQWQTKRNIQKIREIRSLTEAVKYSFVNRKFNQV 277
+ YRK+I E D+ V + + N ++ + I++ R + E + +V R NQ
Sbjct: 253 SQGYRKVIFEGDSKQVEELM--NNEKLNFGRFNWIREGRFWQKRFEEAVFKWVPRTNNQP 310
Query: 278 ADKLAK 283
AD LAK
Sbjct: 311 ADILAK 316
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 71.6 bits (174), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 127/295 (43%), Gaps = 36/295 (12%)
Query: 14 VPRIKLFLWKICVKALPVRER-IGKYIDNNLNCPNCNVVESMEHALLHYPLAKNIWFYFN 72
+P+IKLFLWK ALPV + + ++I + +C C E+ H L H A +W N
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVW---N 57
Query: 73 FISEQIPSIRDWIFSWEQNPELNQT----HNGFHVAT----IMWIIWKIRCDHCFQHEIN 124
Q+ I E L +T G H AT I W IWK R FQ N
Sbjct: 58 LAPLQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQ---N 114
Query: 125 SLDQIISIITNFP------QYKQKSHNRTKMV---PDRWTPPIQDWVKINVDASFNNINE 175
S +I +T Q Q + + ++ P+ T D++ VDA++ +
Sbjct: 115 SHFSVIETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHDFL-CYVDAAWQQQSS 173
Query: 176 TAGIGIVIH--NHASEFIEAYVTTTR---SRSAEECESLAILMEWAVAHNYRKIIIENDN 230
AG G V +H+ + I + R S A E ++ M A+ +++ +D+
Sbjct: 174 LAGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDS 233
Query: 231 INVIQYLQKN--RNEIQWQTKRNIQKIREIRSLTEAVKYSFVNRKFNQVADKLAK 283
+++ L N NEI + +IR IR+ ++ + F+ R N +AD AK
Sbjct: 234 KSIVDALNSNVSLNEI----FGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAK 284
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 135/308 (43%), Gaps = 41/308 (13%)
Query: 8 IWSIQVVPRIKLFLWKICVKALPVRERI---GKYIDNNLNCPNCNVV-ESMEHALLHYPL 63
IW++ ++P++K FLW+ +AL ER+ G ID +CP C+ ES+ HAL P
Sbjct: 162 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDP--SCPRCHRENESINHALFTCPF 219
Query: 64 AKNIW-----------FYFNFISEQIPSIRDWIFSWEQNPELNQTHNGFHVATIMWIIWK 112
A W N E I +I +++ Q+ ++ H V ++W IWK
Sbjct: 220 ATMAWRLSDSSLIRNQLMSNDFEENISNILNFV----QDTTMSDFHKLLPVW-LIWRIWK 274
Query: 113 IRCDHCFQHEINSLDQIISIIT-------NFPQYKQKSHNRTKMVPD---RWTPPIQDWV 162
R + F S + + N Q +K+ + T+ + + W P +V
Sbjct: 275 ARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYV 334
Query: 163 KINVDASFNNINETAGIGIVIHNHASEFIE-AYVTTTRSRSAEECESLAIL--MEWAVAH 219
K N DA F+ A G +I NH I + + + E E+ A+L ++
Sbjct: 335 KCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIR 394
Query: 220 NYRKIIIENDNINVIQYLQKNRNEIQWQTK--RNIQKIREIRSLTEAVKYSFVNRKFNQV 277
Y ++ +E D +I + N I + + +++ I + ++++ F+ RK N++
Sbjct: 395 GYTQVFMEGDCQTLINLI----NGISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKL 450
Query: 278 ADKLAKWA 285
A LAK+
Sbjct: 451 AHVLAKYG 458
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 17/196 (8%)
Query: 106 IMWIIWKIRCDHCFQHEINSLDQIISI--------ITNFPQYKQKSHNRTKMVPDR---W 154
+MW IWK D F H + + + N +Q++ NR P R W
Sbjct: 47 LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNR-NADPSRNTKW 105
Query: 155 TPPIQDWVKINVDASFNNINETAGIGIVIHNHASEFIEAYVTTTRSR---SAEECESLAI 211
+PP +D +K N DAS + N +G+G ++ N IE + + R EC +L
Sbjct: 106 SPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIW 165
Query: 212 LMEWAVAHNYRKIIIENDNINVIQYLQKNRNEIQWQTKRNIQKIREIRSLTEAVKYSFVN 271
++ + ++K+I E DN + + + + + Q + I+ E++++SF +
Sbjct: 166 AIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQ--HFLDTIQSWIPSFESIEFSFKH 223
Query: 272 RKFNQVADKLAKWARK 287
R+ N AD LAK A K
Sbjct: 224 REQNGCADFLAKQAIK 239