BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g1640.1
(113 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 50 6e-08
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 48 3e-07
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 48 3e-07
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 47 4e-07
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 46 1e-06
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 49.7 bits (117), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 2 GGLGIHNTELDNQALMSKLAWKIKSESKAIWVQLLKSKYYNNSEQPGLA-KTHHSWHWKN 60
GG+G + E N AL+ K W++ S +++ ++ KS+Y++ S+ + S+ WK+
Sbjct: 54 GGIGFKDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKS 113
Query: 61 ISKHLYNIDKLSSWEVQNGKNIEVWKDNWIPT---------LNNPPENIYN-SQITKVSQ 110
I + + + V NG++I +W+ W+ + PP+ + S I KVS
Sbjct: 114 IHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSD 173
Query: 111 LID 113
LID
Sbjct: 174 LID 176
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 47.8 bits (112), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 2 GGLGIHNTELDNQALMSKLAWKIKSESKAIWVQLL------KSKYYNNSEQPGLAKTHHS 55
GGLGI + + N+ + KL W++ S S ++WVQ L K +++ S L S
Sbjct: 182 GGLGIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLG----S 236
Query: 56 WHWKNISKHLYNIDKLSSWEVQNGKNIEVWKDNW 89
W WK I KH ++ NG N W DNW
Sbjct: 237 WMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 47.8 bits (112), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 2 GGLGIHNTELDNQALMSKLAWKIKSESKAIWVQLL------KSKYYNNSEQPGLAKTHHS 55
GGLGI + + N+ + KL W++ S S ++WVQ L K +++ S L S
Sbjct: 182 GGLGIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLG----S 236
Query: 56 WHWKNISKHLYNIDKLSSWEVQNGKNIEVWKDNW 89
W WK I KH ++ NG N W DNW
Sbjct: 237 WMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 47.4 bits (111), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 2 GGLGIHNTELDNQALMSKLAWKIKSESKAIWVQLL------KSKYYNNSEQPGLAKTHHS 55
GGLGI + + N+ + KL W++ S S ++WVQ L K +++ S L S
Sbjct: 128 GGLGIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLG----S 182
Query: 56 WHWKNISKHLYNIDKLSSWEVQNGKNIEVWKDNW 89
W WK I KH ++ NG N W DNW
Sbjct: 183 WMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 216
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 45.8 bits (107), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 2 GGLGIHNTELDNQALMSKLAWKIKSESKAIWVQ------LLKSKYYNNSEQPGLAKTHHS 55
GGLGI + + N+ + KL W++ S S ++WVQ L K +++ S L S
Sbjct: 182 GGLGIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLG----S 236
Query: 56 WHWKNISKHLYNIDKLSSWEVQNGKNIEVWKDNW 89
W WK I KH ++ NG N W DNW
Sbjct: 237 WMWKKILKHRALASGFVKHDIHNGSNTSFWFDNW 270