BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000093.1_g1690.1
         (341 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947...    60   7e-10
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240...    58   3e-09

>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
           Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
          Length = 369

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 1   MNLKLQLQTTKKGSLSVNEYLLRLKSISDSLAAVGHPVADSELVLVILSGLGSDYEGFVT 60
           +  + +L+TT    LSV+EY  +LKS+SD L  V  P++D  LV+ +L+GL   Y+  + 
Sbjct: 117 LQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILN 176

Query: 61  SITTRLTPPSSSELHSLLLTHEFWIELLRTQNVQRA-------ALLSQPTAPPR-PQSFS 112
            I  +   PS +E  S+LL  E  +      ++           L + P    R PQ + 
Sbjct: 177 VIKHKSPFPSFTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYH 236

Query: 113 THRGNRGR-----SNRGGYRGSSRGYNSNRGGYQKYTSSVLGPPPQPLICQYCG 161
            +  N GR      NRGG     R  N+N     +  + + GPP  P +  + G
Sbjct: 237 NNNSNMGRGRSKKKNRGGGSSDGRYNNNNNWRLNQPPTWIYGPPQSPYMYPHGG 290


>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
           Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
          Length = 308

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 1   MNLKLQLQTTKKGSLSVNEYLLRLKSISDSLAAVGHPVADSELVLVILSGLGSDYEGFVT 60
           + L  +L+T   G + V +Y  ++K ++DSL  V  PV D  LV+ +L+GL   ++  + 
Sbjct: 115 LRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIIN 174

Query: 61  SITTRLTPPSSSELHSLLLTHEFWIELLRTQN------VQRAALLSQPTAPPRPQSFSTH 114
            I  R   PS  +  ++L   E  ++     N         + +L+   APP        
Sbjct: 175 VIKHRQPFPSFDDAATMLQEEEDRLKRAIKPNPTHVDHSSSSTVLACSEAPP------VT 228

Query: 115 RGNRGRSNRGGYRGSSRGYNSNRG 138
              R   N+ GYRG  RG N  RG
Sbjct: 229 NFQRSGGNQMGYRGRGRGNNIFRG 252

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