BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g1710.1
(538 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 429 e-139
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 429 e-139
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 227 7e-71
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 129 5e-35
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 82 8e-19
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 429 bits (1102), Expect = e-139, Method: Compositional matrix adjust.
Identities = 217/496 (43%), Positives = 308/496 (62%), Gaps = 7/496 (1%)
Query: 28 EPSTYLQASKFAHWNQAMVDEIQALKKNNTWTLVPPPVNGNVVDCKWIYKVKQKADGLIQ 87
EPSTY +A +F W AM DEI A++ +TW + P N + CKW+YK+K +DG I+
Sbjct: 85 EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144
Query: 88 RCKARLVARGYTQEHGVDYDETYSPVVRPATIRSILSIAISGNWKIQQLDVKNAFLNGDL 147
R KARLVA+GYTQ+ G+D+ ET+SPV + +++ IL+I+ N+ + QLD+ NAFLNGDL
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204
Query: 148 VETVYMSQPKGFE----NQYLPNHVCKLNKAIYGLKQAPRACHSRFSSSIIKFGFRQSIS 203
E +YM P G+ + PN VC L K+IYGLKQA R +FS ++I FGF QS S
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHS 264
Query: 204 DPSMFYFHSSKDIIILLLYVDDIIVTGSSPSLLTTFISWLKSQFDMTDLGPLSYFLGMEA 263
D + F ++ + +L+YVDDII+ ++ + + S LKS F + DLGPL YFLG+E
Sbjct: 265 DHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324
Query: 264 TRSSESLILTQRKYSIDLLNRFGLLESKPVSTPVLTGSKLSKLDGTPLPNPQIFRSLVGA 323
RS+ + + QRKY++DLL+ GLL KP S P+ S G + + +R L+G
Sbjct: 325 ARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGR 384
Query: 324 LQYLTLTRPDIAYSVNQISKFMSKPSSVHLMAAKRILRYLKGTLSHGLCFRRATSLPLIG 383
L YL +TR DI+++VN++S+F P H A +IL Y+KGT+ GL + + L
Sbjct: 385 LMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQV 444
Query: 384 YSDADWARSPDDRRSTSGYCIFLGPNLIAWASKTQPTVARSSTEAEYRAVALASTELIWL 443
+SDA + D RRST+GYC+FLG +LI+W SK Q V++SS EAEYRA++ A+ E++WL
Sbjct: 445 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 504
Query: 444 RNLLKELGLSQGTPPIIHCDNLSTTYLTVNPILHSRTKHVAIDFHFVREQ-VKAGTLKVQ 502
+EL L P ++ CDN + ++ N + H RTKH+ D H VRE+ V TL
Sbjct: 505 AQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYS 564
Query: 503 FIPGDSQLADIFTKGL 518
F D Q D FT+ L
Sbjct: 565 FQAYDEQ--DGFTEYL 578
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 429 bits (1102), Expect = e-139, Method: Compositional matrix adjust.
Identities = 217/496 (43%), Positives = 308/496 (62%), Gaps = 7/496 (1%)
Query: 28 EPSTYLQASKFAHWNQAMVDEIQALKKNNTWTLVPPPVNGNVVDCKWIYKVKQKADGLIQ 87
EPSTY +A +F W AM DEI A++ +TW + P N + CKW+YK+K +DG I+
Sbjct: 85 EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144
Query: 88 RCKARLVARGYTQEHGVDYDETYSPVVRPATIRSILSIAISGNWKIQQLDVKNAFLNGDL 147
R KARLVA+GYTQ+ G+D+ ET+SPV + +++ IL+I+ N+ + QLD+ NAFLNGDL
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204
Query: 148 VETVYMSQPKGFE----NQYLPNHVCKLNKAIYGLKQAPRACHSRFSSSIIKFGFRQSIS 203
E +YM P G+ + PN VC L K+IYGLKQA R +FS ++I FGF QS S
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHS 264
Query: 204 DPSMFYFHSSKDIIILLLYVDDIIVTGSSPSLLTTFISWLKSQFDMTDLGPLSYFLGMEA 263
D + F ++ + +L+YVDDII+ ++ + + S LKS F + DLGPL YFLG+E
Sbjct: 265 DHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324
Query: 264 TRSSESLILTQRKYSIDLLNRFGLLESKPVSTPVLTGSKLSKLDGTPLPNPQIFRSLVGA 323
RS+ + + QRKY++DLL+ GLL KP S P+ S G + + +R L+G
Sbjct: 325 ARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGR 384
Query: 324 LQYLTLTRPDIAYSVNQISKFMSKPSSVHLMAAKRILRYLKGTLSHGLCFRRATSLPLIG 383
L YL +TR DI+++VN++S+F P H A +IL Y+KGT+ GL + + L
Sbjct: 385 LMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQV 444
Query: 384 YSDADWARSPDDRRSTSGYCIFLGPNLIAWASKTQPTVARSSTEAEYRAVALASTELIWL 443
+SDA + D RRST+GYC+FLG +LI+W SK Q V++SS EAEYRA++ A+ E++WL
Sbjct: 445 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 504
Query: 444 RNLLKELGLSQGTPPIIHCDNLSTTYLTVNPILHSRTKHVAIDFHFVREQ-VKAGTLKVQ 502
+EL L P ++ CDN + ++ N + H RTKH+ D H VRE+ V TL
Sbjct: 505 AQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYS 564
Query: 503 FIPGDSQLADIFTKGL 518
F D Q D FT+ L
Sbjct: 565 FQAYDEQ--DGFTEYL 578
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 227 bits (578), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 155/227 (68%), Gaps = 3/227 (1%)
Query: 217 IILLLYVDDIIVTGSSPSLLTTFISWLKSQFDMTDLGPLSYFLGMEATRSSESLILTQRK 276
+ LLLYVDDI++TGSS +LL I L S F M DLGP+ YFLG++ L L+Q K
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 277 YSIDLLNRFGLLESKPVSTPVLTGSKL-SKLDGTPLPNPQIFRSLVGALQYLTLTRPDIA 335
Y+ +LN G+L+ KP+STP+ KL S + P+P FRS+VGALQYLTLTRPDI+
Sbjct: 61 YAEQILNNAGMLDCKPMSTPL--PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDIS 118
Query: 336 YSVNQISKFMSKPSSVHLMAAKRILRYLKGTLSHGLCFRRATSLPLIGYSDADWARSPDD 395
Y+VN + + M +P+ KR+LRY+KGT+ HGL + + L + + D+DWA
Sbjct: 119 YAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTST 178
Query: 396 RRSTSGYCIFLGPNLIAWASKTQPTVARSSTEAEYRAVALASTELIW 442
RRST+G+C FLG N+I+W++K QPTV+RSSTE EYRA+AL + EL W
Sbjct: 179 RRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 129 bits (325), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 12/140 (8%)
Query: 1 MITRSRDGTRK--PRVLLTTPTNELVTLVEPSTYLQASKFAHWNQAMVDEIQALKKNNTW 58
M+TRS+ G K P+ LT T EP + + A K W QAM +E+ AL +N TW
Sbjct: 1 MLTRSKAGINKLNPKYSLTITTT---IKKEPKSVIFALKDPGWCQAMQEELDALSRNKTW 57
Query: 59 TLVPPPVNGNVVDCKWIYKVKQKADGLIQRCKARLVARGYTQEHGVDYDETYSPVVRPAT 118
LVPPPVN N++ CKW++K K +DG + R KARLVA+G+ QE G+ + ETYSPVVR AT
Sbjct: 58 ILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTAT 117
Query: 119 IRSILSIAISGNWKIQQLDV 138
IR+IL++A QQL+V
Sbjct: 118 IRTILNVA-------QQLEV 130
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 82.4 bits (202), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 53/78 (67%)
Query: 326 YLTLTRPDIAYSVNQISKFMSKPSSVHLMAAKRILRYLKGTLSHGLCFRRATSLPLIGYS 385
YLT+TRPD+ ++VN++S+F S + + A ++L Y+KGT+ GL + + L L ++
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 386 DADWARSPDDRRSTSGYC 403
D+DWA PD RRS +G+C
Sbjct: 62 DSDWASCPDTRRSVTGFC 79