BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000093.1_g1820.1
         (116 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240...    56   3e-10
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947...    52   1e-08

>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
           Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
          Length = 308

 Score = 56.2 bits (134), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 56/96 (58%), Gaps = 4/96 (4%)

Query: 1   MNLELQLQTQKKGSLTVSEYLLRIKTISDSLSAIGHPIADSELVLIVLSGLGSDYESFVT 60
           + L+ +L+T+  G + V++Y  ++K ++DSL  +  P+ D  LV+ VL+GL   +++ + 
Sbjct: 115 LRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIIN 174

Query: 61  SITTRLIPPSYAELHSLLLTHEFRIDLLRQQSIQPT 96
            I  R   PS+ +  ++L   E R+    +++I+P 
Sbjct: 175 VIKHRQPFPSFDDAATMLQEEEDRL----KRAIKPN 206


>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
           Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
          Length = 369

 Score = 52.0 bits (123), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 1   MNLELQLQTQKKGSLTVSEYLLRIKTISDSLSAIGHPIADSELVLIVLSGLGSDYESFVT 60
           +  E +L+T     L+V EY  ++K++SD L+ +  PI+D  LV+ +L+GL   Y+  + 
Sbjct: 117 LQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILN 176

Query: 61  SITTRLIPPSYAELHSLLLTHEFR 84
            I  +   PS+ E  S+LL  E R
Sbjct: 177 VIKHKSPFPSFTEARSMLLMEESR 200

Top