BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000093.1_g1900.1
(248 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 149 7e-41
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 149 7e-41
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 97 3e-24
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 55 1e-09
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 149 bits (377), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 138/235 (58%), Gaps = 3/235 (1%)
Query: 16 VCKLVKSLYGLKQAPKQWHLKFYQAMLSNGFKINECDKCVYTKVTAKGCVILCLYVDDML 75
VC L KS+YGLKQA +QW LKF ++ GF + D + K+TA + + +YVDD++
Sbjct: 229 VCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDII 288
Query: 76 IMGDNIDVIKTTKQMLSKNFDMKDLGRAEVILGIKISRSSSGIKLSQTHYVEKILEKFSK 135
I +N + K L F ++DLG + LG++I+RS++GI + Q Y +L++
Sbjct: 289 ICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGL 348
Query: 136 NDMSLARTPIDPTVHLMKNR-GQGVNQLRYSQIIGSLMYLMNCTRPDVAYSVSKLSRFTS 194
+ P+DP+V + G V+ Y ++IG LMYL TR D++++V+KLS+F+
Sbjct: 349 LGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYL-QITRLDISFAVNKLSQFSE 407
Query: 195 NPSKEHWTAIVRVLRYLRQTKEYGLLYTKYPEV-LEGYADANWISDTDDTKSTSG 248
P H A++++L Y++ T GL Y+ E+ L+ ++DA++ S D +ST+G
Sbjct: 408 APRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNG 462
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 149 bits (377), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 138/235 (58%), Gaps = 3/235 (1%)
Query: 16 VCKLVKSLYGLKQAPKQWHLKFYQAMLSNGFKINECDKCVYTKVTAKGCVILCLYVDDML 75
VC L KS+YGLKQA +QW LKF ++ GF + D + K+TA + + +YVDD++
Sbjct: 229 VCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDII 288
Query: 76 IMGDNIDVIKTTKQMLSKNFDMKDLGRAEVILGIKISRSSSGIKLSQTHYVEKILEKFSK 135
I +N + K L F ++DLG + LG++I+RS++GI + Q Y +L++
Sbjct: 289 ICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGL 348
Query: 136 NDMSLARTPIDPTVHLMKNR-GQGVNQLRYSQIIGSLMYLMNCTRPDVAYSVSKLSRFTS 194
+ P+DP+V + G V+ Y ++IG LMYL TR D++++V+KLS+F+
Sbjct: 349 LGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYL-QITRLDISFAVNKLSQFSE 407
Query: 195 NPSKEHWTAIVRVLRYLRQTKEYGLLYTKYPEV-LEGYADANWISDTDDTKSTSG 248
P H A++++L Y++ T GL Y+ E+ L+ ++DA++ S D +ST+G
Sbjct: 408 APRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNG 462
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 97.4 bits (241), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 98/183 (53%), Gaps = 2/183 (1%)
Query: 67 LCLYVDDMLIMGDNIDVIKTTKQMLSKNFDMKDLGRAEVILGIKISRSSSGIKLSQTHYV 126
L LYVDD+L+ G + ++ LS F MKDLG LGI+I SG+ LSQT Y
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 127 EKILEKFSKNDMSLARTPIDPTVHLMKNRGQGVNQLRYSQIIGSLMYLMNCTRPDVAYSV 186
E+IL D TP+ ++ + + + + I+G+L YL TRPD++Y+V
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAV 121
Query: 187 SKLSRFTSNPSKEHWTAIVRVLRYLRQTKEYGLLYTKYPEV-LEGYADANWISDTDDTKS 245
+ + + P+ + + RVLRY++ T +GL K ++ ++ + D++W T +S
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181
Query: 246 TSG 248
T+G
Sbjct: 182 TTG 184
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 55.1 bits (131), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 172 MYLMNCTRPDVAYSVSKLSRFTSNPSKEHWTAIVRVLRYLRQTKEYGLLYTKYPEV-LEG 230
MYL TRPD+ ++V++LS+F+S A+ +VL Y++ T GL Y+ ++ L+
Sbjct: 1 MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 59
Query: 231 YADANWISDTDDTKSTSG 248
+AD++W S D +S +G
Sbjct: 60 FADSDWASCPDTRRSVTG 77