BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0050.1
(717 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 174 4e-45
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 174 4e-45
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 117 1e-30
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 94 6e-22
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 65 2e-12
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 174 bits (442), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/187 (48%), Positives = 121/187 (64%), Gaps = 12/187 (6%)
Query: 534 EPVTFKKAITAEERESWLVAMEEEMKSLHKNKTWEVVPLPEGKSVIGCKWVYKKKEDSSE 593
EP T+ +A +E W AM++E+ ++ TWE+ LP K IGCKWVYK K +S
Sbjct: 85 EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNS-- 139
Query: 594 IKGT--RYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRVLLSIVAHSDLELEQLDVKTA 651
GT RYKARLVAKGY Q+EG+D+ E FSPV K TS++++L+I A + L QLD+ A
Sbjct: 140 -DGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNA 198
Query: 652 FLHGDLEEEIYMAQPEGYKVEGKE----NQVCRLRKSLYGLKQSPRQWYKQFDFFMLKHG 707
FL+GDL+EEIYM P GY + N VC L+KS+YGLKQ+ RQW+ +F ++ G
Sbjct: 199 FLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFG 258
Query: 708 FRRSDYD 714
F +S D
Sbjct: 259 FVQSHSD 265
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 174 bits (442), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/187 (48%), Positives = 121/187 (64%), Gaps = 12/187 (6%)
Query: 534 EPVTFKKAITAEERESWLVAMEEEMKSLHKNKTWEVVPLPEGKSVIGCKWVYKKKEDSSE 593
EP T+ +A +E W AM++E+ ++ TWE+ LP K IGCKWVYK K +S
Sbjct: 85 EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNS-- 139
Query: 594 IKGT--RYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRVLLSIVAHSDLELEQLDVKTA 651
GT RYKARLVAKGY Q+EG+D+ E FSPV K TS++++L+I A + L QLD+ A
Sbjct: 140 -DGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNA 198
Query: 652 FLHGDLEEEIYMAQPEGYKVEGKE----NQVCRLRKSLYGLKQSPRQWYKQFDFFMLKHG 707
FL+GDL+EEIYM P GY + N VC L+KS+YGLKQ+ RQW+ +F ++ G
Sbjct: 199 FLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFG 258
Query: 708 FRRSDYD 714
F +S D
Sbjct: 259 FVQSHSD 265
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 117 bits (294), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 3/119 (2%)
Query: 92 GSIKIIKGSLVVMRGTRYGNLYKLLGTTITGDVAVGISGRDPTASTRLWHMRLGHMSEKG 151
G +K++KG +++G R+ +LY L G+ TG+ + + +D TRLWH RL HMS++G
Sbjct: 27 GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKD---ETRLWHSRLAHMSQRG 83
Query: 152 LSLMCGKGLLKDMKKPCMEFCEHCVFGKAHRVTFSTSKHRSKEVLDYVHIDVWGPAKLP 210
+ L+ KG L K ++FCE C++GK HRV FST +H +K LDYVH D+WG +P
Sbjct: 84 MELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVP 142
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 94.0 bits (232), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 73/113 (64%), Gaps = 5/113 (4%)
Query: 525 EYALSVEDDEPVTFKKAITAEERESWLVAMEEEMKSLHKNKTWEVVPLPEGKSVIGCKWV 584
+Y+L++ K I A + W AM+EE+ +L +NKTW +VP P ++++GCKWV
Sbjct: 15 KYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWV 74
Query: 585 YKKKEDSSEIKGT--RYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRVLLSI 635
+K K S GT R KARLVAKG+ Q+EG+ + E +SPVV+ +IR +L++
Sbjct: 75 FKTKLHSD---GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNV 124
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 65.1 bits (157), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%)
Query: 303 LNRTLLEKARCMRSNSGLDVEWWAEYVATTCYIVNRSPHSSLDGGIPYEVWSVEHADYER 362
+NRT++EK R M GL + A+ T +I+N+ P ++++ +P EVW Y
Sbjct: 1 MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60
Query: 363 LRVFGCTAYYHVKGNKLDNRANKA 386
LR FGC AY H KL RA K
Sbjct: 61 LRRFGCVAYIHCDEGKLKPRAKKG 84