BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000102.1_g0100.1
         (167 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...    70   7e-15

>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
           Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score = 70.1 bits (170), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 73/168 (43%), Gaps = 10/168 (5%)

Query: 5   LVAKNKQGFIDDSLSKPVDPASAAL--WTRCDVMVSAWIQNSVCPEIRKSCTRCPSAFLV 62
           L    K GFID +L KP DP S     W +C+ MV  W+ NS+  ++ +S     +A  +
Sbjct: 53  LRVTKKFGFIDGTLPKP-DPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKM 111

Query: 63  WKFLKEHYAQSNNSYMLQIRKNIAALCQGNLIVTSYFSKLKSLWDEHDTVMPPHPCVCGA 122
           W+ L+  +    +  + Q+R+ +A L QG   V  YF KL  +W E     P   C CG 
Sbjct: 112 WEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGG 171

Query: 123 -----GTAMLEYVSTIRIMEFLEG--LHDRFSTARSSIFLIDHCPLLH 163
                     E     +  EFL G  L+  F    + I      P LH
Sbjct: 172 CNCECTKRAEEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLH 219

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