BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0180.1
(162 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G01150.1 | CURVATURE THYLAKOID 1A-like protein | Chr4:493692-... 173 9e-56
AT4G38100.1 | CURVATURE THYLAKOID 1D-like protein | Chr4:1788703... 96 4e-25
AT4G38100.2 | CURVATURE THYLAKOID 1D-like protein | Chr4:1788703... 94 5e-25
AT4G01150.2 | CURVATURE THYLAKOID 1A-like protein | Chr4:493692-... 93 7e-25
AT2G46820.2 | photosystem I P subunit | Chr2:19243729-19244870 F... 77 3e-18
>AT4G01150.1 | CURVATURE THYLAKOID 1A-like protein |
Chr4:493692-494668 FORWARD LENGTH=164 | 201606
Length = 164
Score = 173 bits (438), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 99/111 (89%), Gaps = 2/111 (1%)
Query: 54 RRVSSFQIRASSEESS--DVSEVLEDLKEKWDAIEDKSTVLLYGGGAVVGVWLASVVVGA 111
++V + RASSEE+S D +E++ DLKEKWD +E+KSTVL+YGGGA+V VWL+S+VVGA
Sbjct: 54 QKVELLKTRASSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGA 113
Query: 112 INSIPLVPRFMEVVGLGYTGWFIYRYLLFKSNRKELAEDIESLKKKITGSE 162
INS+PL+P+ ME+VGLGYTGWF+YRYLLFKS+RKELAEDIESLKKKI GSE
Sbjct: 114 INSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164
>AT4G38100.1 | CURVATURE THYLAKOID 1D-like protein |
Chr4:17887033-17888177 REVERSE LENGTH=193 | 201606
Length = 193
Score = 95.9 bits (237), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 4/112 (3%)
Query: 51 SESRRVSSFQIRASSEESSDVSEVLEDLKEKWDAIEDKSTVLLYGGGAVVGVWLASVVVG 110
+E + +S +A EE+ + E L D+K D ++LLYG GA+V ++L S +V
Sbjct: 84 AEEKNSNSEAPQAEDEETQAL-EFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVS 139
Query: 111 AINSIPLVPRFMEVVGLGYTGWFIYRYLLFKSNRKELAEDIESLKKKITGSE 162
++ +IPL P+ MEVVGLGYT WF RYLLFK NR+EL + +KK++ GS+
Sbjct: 140 SLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGSD 191
>AT4G38100.2 | CURVATURE THYLAKOID 1D-like protein |
Chr4:17887033-17887811 REVERSE LENGTH=153 | 201606
Length = 153
Score = 94.4 bits (233), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 4/112 (3%)
Query: 51 SESRRVSSFQIRASSEESSDVSEVLEDLKEKWDAIEDKSTVLLYGGGAVVGVWLASVVVG 110
+E + +S +A EE+ + E L D+K D ++LLYG GA+V ++L S +V
Sbjct: 44 AEEKNSNSEAPQAEDEETQAL-EFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVS 99
Query: 111 AINSIPLVPRFMEVVGLGYTGWFIYRYLLFKSNRKELAEDIESLKKKITGSE 162
++ +IPL P+ MEVVGLGYT WF RYLLFK NR+EL + +KK++ GS+
Sbjct: 100 SLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGSD 151
>AT4G01150.2 | CURVATURE THYLAKOID 1A-like protein |
Chr4:493692-494379 FORWARD LENGTH=125 | 201606
Length = 125
Score = 93.2 bits (230), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 57/67 (85%), Gaps = 2/67 (2%)
Query: 54 RRVSSFQIRASSEESS--DVSEVLEDLKEKWDAIEDKSTVLLYGGGAVVGVWLASVVVGA 111
++V + RASSEE+S D +E++ DLKEKWD +E+KSTVL+YGGGA+V VWL+S+VVGA
Sbjct: 54 QKVELLKTRASSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGA 113
Query: 112 INSIPLV 118
INS+PLV
Sbjct: 114 INSVPLV 120
>AT2G46820.2 | photosystem I P subunit | Chr2:19243729-19244870
FORWARD LENGTH=174 | 201606
Length = 174
Score = 77.4 bits (189), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 58/88 (65%)
Query: 74 VLEDLKEKWDAIEDKSTVLLYGGGAVVGVWLASVVVGAINSIPLVPRFMEVVGLGYTGWF 133
+++ +E W+ ++DK + VV +W ++ ++ AI+ +PLVP +E+VG+GYTGWF
Sbjct: 86 IVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWF 145
Query: 134 IYRYLLFKSNRKELAEDIESLKKKITGS 161
Y+ L+FK +R+ L E ++S K I GS
Sbjct: 146 TYKNLVFKPDREALFEKVKSTYKDILGS 173