BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0200.1
(185 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 63 1e-11
AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 56 1e-09
AT4G09775.1 | non-LTR retroelement reverse transcriptase | Chr4:... 52 2e-08
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 52 4e-08
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 50 2e-07
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 17/193 (8%)
Query: 1 MWNWWKVRNELIFRNVTPDLKICRWKTCEDLRFASI--PMHSHLANPYV---SADLWCPP 55
+W WK RNEL+FR + + + +DL I S P V S W PP
Sbjct: 364 LWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPP 423
Query: 56 PMGTIKINFDGSYKETRAACAA--VARNENGIIRDVRTNLFLPI-SPLHSEMLGFRSAVE 112
P +K N D ++ C V RNE G ++ + + S L +E+ R AV
Sbjct: 424 PHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAV- 482
Query: 113 MVEERRDWSYII-EGDSRVLLELISADD--PTIPWRLYNEINDL-RSRSRQLDVTLAYCP 168
+ R ++Y+I E DS+VL+E+++ D+ P+ L I DL R S+ +V + P
Sbjct: 483 LSLSRFQYNYVIFESDSQVLIEILNNDEIWPS----LKPTIQDLQRLLSQFTEVKFVFIP 538
Query: 169 RENNTLAHGLAAE 181
RE NTLA +A E
Sbjct: 539 REGNTLAERVARE 551
>AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:1535561-1536226 FORWARD
LENGTH=221 | 201606
Length = 221
Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 17/199 (8%)
Query: 1 MWNWWKVRNELIFRNVTPDLK---------ICRWKTCEDL--RFASIPMHSHLANPYVSA 49
MW W+ RN+L+F++ + + W+ ++ + N +
Sbjct: 1 MWRLWRSRNQLVFQHQNLSWQSTLKRAKDDVQEWENAQEYIQSLNHYTVREGCNNRESTH 60
Query: 50 DLWCPPPMGTIKINFDGS--YKETRAACAAVARNENGIIRDVRTNLFLPI-SPLHSEMLG 106
W PPMG IK N+DGS Y+ + + R++ G + + + + L SE+
Sbjct: 61 QKWEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALESELQA 120
Query: 107 FRSAVEMVEERRDWSYIIEGDSRVLLELISADDPTIPWRLYNEINDLRSRSRQL-DVTLA 165
A++ + I EGDS+ + EL+ + + + +N I + S S++ +V +
Sbjct: 121 LVMAMQHTWSQGYRKVIFEGDSKQVEELL--NRKQMHFGAFNWIREAWSWSKRFEEVIFS 178
Query: 166 YCPRENNTLAHGLAAEYSP 184
+ PR NN A LA + P
Sbjct: 179 WTPRTNNQPADMLAKSHLP 197
>AT4G09775.1 | non-LTR retroelement reverse transcriptase |
Chr4:6156629-6157054 FORWARD LENGTH=141 | 201606
Length = 141
Score = 51.6 bits (122), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 1 MWNWWKVRNELIFRNVTP-DLKICRWKTCEDLRFASIPMH----SHLAN-----PYVSAD 50
MW WK RNE +F+ + K+ + E + ++ SH P +
Sbjct: 1 MWRLWKSRNEFLFQQIDRFPWKVAQKGEQEATEWVETTINDTANSHSTEQPNDRPSGRSK 60
Query: 51 LWCPPPMGTIKINFDGSYKETR--AACAAVARNENG-IIRDVRTNLFLPISPLHSEMLGF 107
W PPP G +K NFD Y + R + + R+ NG +I L S L +E LGF
Sbjct: 61 EWSPPPEGYLKCNFDSGYVQGRDYTSTCWIIRDSNGHVIHSGCAKLQQSYSALQAEALGF 120
Query: 108 RSAVEMV 114
A++MV
Sbjct: 121 LHALQMV 127
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 52.4 bits (124), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 17/200 (8%)
Query: 1 MWNWWKVRNELIFRNVTPDLKICRWKTCEDLR--------FASIPMHSHLA---NPYVSA 49
+W WK RN+L+F+ + + + D++ S+ H + P ++
Sbjct: 124 LWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMAR 183
Query: 50 DLWCPPPMGTIKINFDGSY-KETRAACAA-VARNENGIIRDVRTNLFLPIS-PLHSEMLG 106
W PP IK N+DG++ +TR A A + R+ENG+ + S L SE
Sbjct: 184 TKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQA 243
Query: 107 FRSAVEMVEERRDWSYIIEGDSRVLLELISADDPTIPWRLYNEINDLRS-RSRQLDVTLA 165
A++ + I EGDS+ + EL+ ++ + + +N I + R + R +
Sbjct: 244 LIIAMQHAWSQGYRKVIFEGDSKQVEELM--NNEKLNFGRFNWIREGRFWQKRFEEAVFK 301
Query: 166 YCPRENNTLAHGLAAEYSPP 185
+ PR NN A LA + P
Sbjct: 302 WVPRTNNQPADILAKHHLQP 321
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 17/193 (8%)
Query: 1 MWNWWKVRNELIFRNVTPDLKICRWKTCEDLRFASI--PMHSHLANPYVSADL---WCPP 55
+W WK RNEL+F+ D + ED S + + P V +L W P
Sbjct: 81 LWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKAP 140
Query: 56 PMGTIKINFDGSYKETRAACAA--VARNENGIIRDVRTNLFLPISP--LHSEMLGFRSAV 111
P +K N D +++ C + RNE+G + + LP + L +E+ R AV
Sbjct: 141 PYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARA-LPRTKNVLEAELEALRWAV 199
Query: 112 EMVEERRDWSYIIEGDSRVLLELISADD--PTIPWRLYNEINDLRSRSRQL-DVTLAYCP 168
+ I E D++ L+ L+++DD PT L + D++ +V + P
Sbjct: 200 LTMSRFNYKRIIFESDAQALVNLLNSDDFWPT----LQPALEDIQQLLHHFEEVKFEFTP 255
Query: 169 RENNTLAHGLAAE 181
R N +A +A E
Sbjct: 256 RGGNKVADRIARE 268