BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0210.1
(1217 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 115 3e-26
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 115 3e-26
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 115 7e-26
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 97 2e-20
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 76 1e-15
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 4/265 (1%)
Query: 832 ITHLLFADDLIVFGNANIKNLDSILQFIAQYEAFSGQKVNFEKSSLLFSRGVPEPIQQQF 891
ITHL FADDL+VF + +++ ILQ ++ FSG +++ EKS++ + GV + +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 892 INQLKATIMTNQAKYLGALLLKPGNRIKSHEWLVEKFQNSLSGWKQKMITQAGRTVLIKS 951
++ +YLG LL + LVEK + + W + ++ AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 952 VLGPYCTYPFSYQLLPTGVVDKLEQAERNFWWGHVENEKKLHFIRWDIISSPKHKGGLGI 1011
V+ + S LP+ + +++ +F W E K + W + +PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 1012 SSLSQVNEALIGKMTWRLLTNPKAVWVKILKGKYIYFDDFWS-SPPPPSPSPFWRSVLNT 1070
SL + N+ + K+ WR+L++ ++WV+ L+ + FWS S S W+ +L
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 1071 REIMEKNALWIIGDGTTLINQYFDN 1095
R + I +G+ + +FDN
Sbjct: 246 RALASGFVKHDIHNGSN-TSFWFDN 269
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 4/265 (1%)
Query: 832 ITHLLFADDLIVFGNANIKNLDSILQFIAQYEAFSGQKVNFEKSSLLFSRGVPEPIQQQF 891
ITHL FADDL+VF + +++ ILQ ++ FSG +++ EKS++ + GV + +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 892 INQLKATIMTNQAKYLGALLLKPGNRIKSHEWLVEKFQNSLSGWKQKMITQAGRTVLIKS 951
++ +YLG LL + LVEK + + W + ++ AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 952 VLGPYCTYPFSYQLLPTGVVDKLEQAERNFWWGHVENEKKLHFIRWDIISSPKHKGGLGI 1011
V+ + S LP+ + +++ +F W E K + W + +PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 1012 SSLSQVNEALIGKMTWRLLTNPKAVWVKILKGKYIYFDDFWS-SPPPPSPSPFWRSVLNT 1070
SL + N+ + K+ WR+L++ ++WV+ L+ + FWS S S W+ +L
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 1071 REIMEKNALWIIGDGTTLINQYFDN 1095
R + I +G+ + +FDN
Sbjct: 246 RALASGFVKHDIHNGSN-TSFWFDN 269
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 4/265 (1%)
Query: 832 ITHLLFADDLIVFGNANIKNLDSILQFIAQYEAFSGQKVNFEKSSLLFSRGVPEPIQQQF 891
ITHL FADDL+VF + +++ ILQ ++ FSG +++ EKS++ + GV + +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 892 INQLKATIMTNQAKYLGALLLKPGNRIKSHEWLVEKFQNSLSGWKQKMITQAGRTVLIKS 951
++ +YLG LL + LVEK + + W + ++ AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 952 VLGPYCTYPFSYQLLPTGVVDKLEQAERNFWWGHVENEKKLHFIRWDIISSPKHKGGLGI 1011
V+ + S LP+ + +++ +F W E K + W + +PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 1012 SSLSQVNEALIGKMTWRLLTNPKAVWVKILKGKYIYFDDFWS-SPPPPSPSPFWRSVLNT 1070
SL + N+ + K+ WR+L++ ++WV+ L+ + FWS S S W+ +L
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 1071 REIMEKNALWIIGDGTTLINQYFDN 1095
R + I +G+ + +FDN
Sbjct: 246 RALASGFVKHDIHNGSN-TSFWFDN 269
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 137/310 (44%), Gaps = 66/310 (21%)
Query: 958 TYPFSYQLLPTGVVDKLEQAERNFWWGHVENEKKLHFIRWDIISSPKHKGGLGISSLSQV 1017
TY + LLP V ++ +FWW + + K +H+ WD +S K +GG+G +
Sbjct: 5 TYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAF 64
Query: 1018 NEALIGKMTWRLLTNPKAVWVKILKGKYIYFDDFWSSPPPPSPSPFWRSVLNTREIMEKN 1077
N AL+GK WR+L+ P+++ K+ K +Y + D ++P PS W+S+ ++EI+ +
Sbjct: 65 NLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQG 124
Query: 1078 ALWIIGDGTTLI---NQYFDNNTVQAITGM-KIPS------------------------- 1108
A ++G+G +I +++ D+ A M ++P
Sbjct: 125 ARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRK 184
Query: 1109 ------------------RTQNNRLI----WCPTESGKFSPKSYYTKIKQLPN------- 1139
R R++ W T SG ++ KS Y + Q+ N
Sbjct: 185 DVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQE 244
Query: 1140 LSEKAQNFPWKQFWKMKEMKPNTQIFIWRLIHD------GLAKRIDTIPQTCRMCESNES 1193
+SE + N +++ WK + P Q F+W+ + + LA R + C C S +
Sbjct: 245 VSEPSLNPIYQKIWK-SQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK- 302
Query: 1194 ESIDHLFERC 1203
E+++HL +C
Sbjct: 303 ETVNHLLFKC 312
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 75.9 bits (185), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 973 KLEQAERNFWWGHVENEKKLHFIRWD-IISSPKHKGGLGISSLSQVNEALIGKMTWRLLT 1031
KL A FWW EN++K+ ++ W + S + GGLG L N+AL+ K ++R++
Sbjct: 20 KLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIH 79
Query: 1032 NPKAVWVKILKGKYIYFDDFWSSPPPPSPSPFWRSVLNTREIMEKNALWIIGDG 1085
P + ++L+ +Y PS WRS+++ RE++ + L IGDG
Sbjct: 80 QPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDG 133