BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0340.1
(218 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 86 3e-19
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 69 3e-13
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 86.3 bits (212), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 32/241 (13%)
Query: 3 WRLKTEPEAIWAKLIKAKYFPNKSTP--GPAKSHHSWNWKTIRRYYNMVNDLSTWEVNSG 60
WR+ + PE++ AK+ K++YF +KS P P S S+ WK+I ++ + V +G
Sbjct: 74 WRMLSRPESLMAKVFKSRYF-HKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNG 132
Query: 61 QEVNIWTDSWIPDLNT----------PLTNVNNSPLTKVAQLIINN--EWNDEILRVTFD 108
+++ IW W+ P + S + KV+ LI + EW +++ + F
Sbjct: 133 EDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFP 192
Query: 109 THTQNLIKTL-PINQEGKDQLKWKLTKTGGFTVASMYKYLTS-----------NNTMNNP 156
+ LI L P + D W T +G +TV S Y LT + NP
Sbjct: 193 EVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNP 252
Query: 157 ITRNWKFIWNLPTIPRIKNFIWKVCNEALPVRGRIG-KYIGNRFNCPNC-NITESIEHAL 214
I + IW T P+I++F+WK + +LPV G + +++ C C + E++ H L
Sbjct: 253 IYQK---IWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLL 309
Query: 215 Y 215
+
Sbjct: 310 F 310
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 68.6 bits (166), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 34/227 (14%)
Query: 17 IKAKYFPNKST-PGPAKSHHSWNWKTIRRYYNMVNDLSTWEVNSGQEVNIWTDSWIPDLN 75
+KA+YF + S + S+ W ++ ++ + + GQ + I D+ + +
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVD--S 58
Query: 76 TPLTNVNNSPLTKVAQLIINNE---------WNDEILRVTFDTHTQNLIKTLPINQEGK- 125
P +N K ++ INN W+D + D I + + + K
Sbjct: 59 HPPRPLNTEETYK--EMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKP 116
Query: 126 DQLKWKLTKTGGFTVASMYKYLTSNNTMNNPI-----------TRNWKFIWNLPTIPRIK 174
D++ W TG +TV S Y LT + + N P TR IWNLP +P++K
Sbjct: 117 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTR----IWNLPIMPKLK 172
Query: 175 NFIWKVCNEALPVRGRIGKYIGNRFN--CPNCNIT-ESIEHALYTVP 218
+F+W+ ++AL R+ G R + CP C+ ESI HAL+T P
Sbjct: 173 HFLWRALSQALATTERLTTR-GMRIDPSCPRCHRENESINHALFTCP 218