BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0500.1
(884 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 90 1e-20
AT4G13320.1 | hypothetical protein | Chr4:7753436-7754086 FORWAR... 54 1e-07
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 90.1 bits (222), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 460 LDHIRAVFEVMRQNSLFMNIPKSFFFLNEVYFLGF--IISKSGTKVDPAKVRAIFECPIP 517
++H+ V ++ Q+ + N K F ++ +LG IIS G DPAK+ A+ P P
Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60
Query: 518 SSPSEVRSFNGLASFYRRFIRDFSTVMAPLTDCLKKGKFLWGPQQDDSFSTIKQRLCSAP 577
+ +E+R F GL +YRRF++++ ++ PLT+ LKK W +F +K + + P
Sbjct: 61 KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120
Query: 578 VLAFPDFSKLF 588
VLA PD F
Sbjct: 121 VLALPDLKLPF 131
>AT4G13320.1 | hypothetical protein | Chr4:7753436-7754086 FORWARD
LENGTH=216 | 201606
Length = 216
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 16/121 (13%)
Query: 37 VFKSRLTINKKVCDFIIDNGSEENMISQRLVN-----------ALKLPTTAISLSVTTQ- 84
VF+++ IN + C ++ G+ N+IS+ LV ++++ T V +
Sbjct: 98 VFRTQCVINDEACRLVLYGGN--NIISKGLVKQLKLKTLKKYPSVRVMATRREDKVAEET 155
Query: 85 CTFPFSIGSYYRDSICCDVVDM--DNCHLIFGRPWIFDVDATYHCRANIFEFSWSNRTLK 142
C P SIG +Y+D + C VV+M + L+FG PW++ V AT++ R + W++ +
Sbjct: 156 CRVPVSIGDFYKDKVTCYVVNMEEEEDQLLFGGPWLYRVQATHNGRDDSCMIIWNHNMIL 215
Query: 143 L 143
L
Sbjct: 216 L 216