BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0560.1
(298 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 121 1e-31
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 120 1e-31
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 121 bits (304), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 154/305 (50%), Gaps = 28/305 (9%)
Query: 13 TTHKSLHPVYTVSNIQHKVRI-LDGTKVSYSLWVKLFTLHAKGYNVLCHIDGSPSPDKES 71
TT S + + I+ + + LD K++Y +W +LF + VL HIDGS +P +
Sbjct: 4 TTLSSYEKSFGIMQIRAYIFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMT 63
Query: 72 AEFASWETIDSIVLQWIYGTLSDDLLVRVMADESTALEAWLRVKHLFRNNKGPRSQALQH 131
+ W+ D +V WIYGT++D LL ++ TA + WL +++LFR+NK R+ ++
Sbjct: 64 EK--RWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFEN 121
Query: 132 ELANLTLASMPSLDAYCQKIRDLTDQLYALDFPMNDQQRVLHLVKGLPKEFDTIASILNN 191
EL T+ + S+ YCQK++ L+D L +D P++D+ V+HL+ GL +++D I +++ +
Sbjct: 122 ELRTTTIDDL-SVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKH 180
Query: 192 S--LPTWEEAIDKLNSGAGRLKTRDAV----TKNPAIAAAIPT------SNPNPNHNRNP 239
P++ EA L RL + T +P+++ + T P HN N
Sbjct: 181 KSPFPSFTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNS 240
Query: 240 N-----NRPNNRPNYRSNNQTNRSPSYHNTRNPP---NPPQHTYNRPVTHQPTYPNHQHQ 291
N ++ NR S+ + N + ++ + P PPQ Y P P H+
Sbjct: 241 NMGRGRSKKKNRGGGSSDGRYNNNNNWRLNQPPTWIYGPPQSPYMYPHGG----PQFFHK 296
Query: 292 QPYYP 296
+ Y+P
Sbjct: 297 KTYFP 301
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 120 bits (300), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 144/293 (49%), Gaps = 27/293 (9%)
Query: 21 VYTVSNIQ-HKVRILDGTKVSYSLWVKLFTLHAKGYNVLCHIDGSPSPDKESAEFASWET 79
+Y VSNI+ H +LD + +Y W +LF H ++V+ HIDG+ P +A +W+
Sbjct: 10 IYGVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLP--TNANDVNWQK 67
Query: 80 IDSIVLQWIYGTLSDDLLVRVMADESTALEAWLRVKHLFRNNKGPRSQALQHELANLTLA 139
D IV +YGTL+ ST+ + WLR+K+ FRNNK R+ L EL +
Sbjct: 68 RDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIG 127
Query: 140 SMPSLDAYCQKIRDLTDQLYALDFPMNDQQRVLHLVKGLPKEFDTIASILNNS--LPTWE 197
M D Y +K++ L D L +D P+ D+ V++++ GL +FD I +++ + P+++
Sbjct: 128 DMRVAD-YYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFD 186
Query: 198 EAIDKLNSGAGRLKTRDAVTKNP--------AIAAAIPTSNPNPNHNRNPNNRPNNRPNY 249
+A L RLK A+ NP + A + P N R+ N+ R
Sbjct: 187 DAATMLQEEEDRLKR--AIKPNPTHVDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRGRG 244
Query: 250 RSNN---QTNRSPSYHNTRNPPNPPQHTYNRPVTHQPTYPNHQHQQPY-YPPY 298
R NN SY+N P +++NRP +Q +Y H P+ YPPY
Sbjct: 245 RGNNIFRGRGGRFSYYNM-----PTFNSWNRPPFYQNSYQMWNH--PWGYPPY 290