BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0600.1
(523 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 144 6e-37
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 110 8e-26
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 77 2e-15
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 74 6e-14
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 73 8e-14
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 144 bits (363), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 143/549 (26%), Positives = 235/549 (42%), Gaps = 54/549 (9%)
Query: 1 MQCFALPKGISNRIEVLQRTFWWRKSNSIHTINWSA---ICLPKKLGGLGFRFPVLDNQA 57
M CF LPK + +I + FWWR ++W A + K GG+GF+ N A
Sbjct: 8 MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67
Query: 58 FLSKLVWRLIKDPDSPWDNILKAKYFTK-DHKPKEAKNHHSWFWKSISKHVDKVTNLTFW 116
L K +WR++ P+S + K++YF K D + S+ WKSI + +
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127
Query: 117 DINKGTNINIWYDYWIPNHP----------PPICNTTNSNLTKVSQLI--INNHWNTTII 164
+ G +I IW W+ + P PP + S++ KVS LI W +I
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187
Query: 165 TQCFNDDICNSILSINL-QEQMDDIARWTLTKSGKFTIKSMYYYL----RTEHYDYETKE 219
F + I + ++ D W T SG +T+KS Y+ L E E
Sbjct: 188 EMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSE 247
Query: 220 ------WIFIWNLPIQPKIKLFLWKCCTKSLLVRGKIG-QFIGHNFDCVFCRA-PETLIH 271
+ IW PKI+ FLWKC + SL V G + + + C+ C + ET+ H
Sbjct: 248 PSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNH 307
Query: 272 ALLHCDLATVVWFHFNII-------SGNINSLIDWIISWKDID---EQISGLFANILWQI 321
L C A + W +I + +I + W+ + + + E+ S L +LW++
Sbjct: 308 LLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRL 367
Query: 322 WKARCDRCFSNAKILPMMVIDQVNS--------TPNLLKHPLPSQPLERNIRWSPPKAPY 373
WK R + F + V+ + T P RW PP +
Sbjct: 368 WKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQW 427
Query: 374 IKINVDASFMDGKEIAGIGCIMYDDQAN--FLAASACNYRGQNAEECECWAIVKALQWST 431
+K N DA++ E GIG ++ +++ ++ A A + ++ E E A+ A+ +
Sbjct: 428 VKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALP-KLKSVLEAELEAMRWAVLSLS 486
Query: 432 SKNIDYLHIESDNSNLVLTLNREQADIGWQAGK-LIYKVRQLEENFIKVIYTHINREGNA 490
+Y+ ESD+ L+ LN ++ W + K I +++L F +V + I REGN
Sbjct: 487 RFQYNYVIFESDSQVLIEILNNDEI---WPSLKPTIQDLQRLLSQFTEVKFVFIPREGNT 543
Query: 491 KADILAKWS 499
A+ +A+ S
Sbjct: 544 LAERVARES 552
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 110 bits (276), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 128/485 (26%), Positives = 202/485 (41%), Gaps = 90/485 (18%)
Query: 78 LKAKYFTKDHKPKEAK--NHHSWFWKSISKHVDKVTNLTFWDINKGTNINIWYDYWIPNH 135
+KA+YF KD +AK S+ W S+ + + T I G NI I D + +H
Sbjct: 1 MKARYF-KDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSH 59
Query: 136 PPPICNTTNSNLTKVSQLIINN---------HWNTTIITQCFNDDICNSILSINL-QEQM 185
PP NT + ++ INN W+ + I+Q + I I L + +
Sbjct: 60 PPRPLNTEET----YKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKK 115
Query: 186 DDIARWTLTKSGKFTIKSMYYYLRTE-------------HYDYETKEWIFIWNLPIQPKI 232
D W +G++T++S Y+ L + D +T+ IWNLPI PK+
Sbjct: 116 PDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTR----IWNLPIMPKL 171
Query: 233 KLFLWKCCTKSLLVRGKIGQFIGHNFD--CVFC-RAPETLIHALLHCDLATVVWFHFNII 289
K FLW+ +++L ++ G D C C R E++ HAL C AT+ W +
Sbjct: 172 KHFLWRALSQALATTERLTT-RGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSD-- 228
Query: 290 SGNINSLIDWIISWKDIDEQISGLFANI----------------LWQIWKARCDRCFSNA 333
+SLI + D +E IS + + +W+IWKAR + F+
Sbjct: 229 ----SSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKF 284
Query: 334 KILPMMVI--------DQVNSTPNLLKHPLPSQPLERN-IRWSPPKAPYIKINVDASFMD 384
+ P + D +N+T + K P P++ + N I W P A Y+K N DA F
Sbjct: 285 RESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDV 344
Query: 385 GKEIAGIGCIMYDDQANFLA-ASACNYRGQNAEECECWAIVKALQWSTSKNIDYLHIESD 443
K A G I+ + ++ S N E E A++ ALQ + + + +E D
Sbjct: 345 QKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGD 404
Query: 444 NSNLVLTLN---------REQADIGWQAGKLIYKVRQLEENFIKVIYTHINREGNAKADI 494
L+ +N DI + A K F + + I R+GN A +
Sbjct: 405 CQTLINLINGISFHSSLANHLEDISFWANK-----------FASIQFGFIRRKGNKLAHV 453
Query: 495 LAKWS 499
LAK+
Sbjct: 454 LAKYG 458
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 117/290 (40%), Gaps = 25/290 (8%)
Query: 230 PKIKLFLWKCCTKSLLVRGK-IGQFIGHNFDCVFCRAPETLIHALLHCDLATVVWFHFNI 288
PKIKLFLWK +L V + + + I +DC C APET H L HCD A VW +
Sbjct: 2 PKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAPL 61
Query: 289 ISGNIN---------SLIDWIISWKDIDEQISGLFANILWQIWKARCDRCFSNAKILPMM 339
G+I +L+ I + + LF I W IWKAR F N+
Sbjct: 62 QLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSH---FS 118
Query: 340 VIDQVNSTPNLLKHPLPSQPLERNIRWSPPKAPYIKI-------NVDASFMDGKEIAGIG 392
VI+ V +Q +R + P+ VDA++ +AG G
Sbjct: 119 VIETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLAGSG 178
Query: 393 CIMY---DDQANFLAASACNYRGQNAEECECWAIVKALQWSTSKNIDYLHIESDNSNLVL 449
+ + SA R + E WAI A+ + L + SD+ ++V
Sbjct: 179 WVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVD 238
Query: 450 TLNREQADIGWQAGKLIYKVRQLEENFIKVIYTHINREGNAKADILAKWS 499
LN + G L+ ++R + F + + I R N+ AD AK S
Sbjct: 239 ALN-SNVSLNEIFG-LLVEIRSIRNRFRSISFQFIPRLVNSIADAAAKLS 286
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 120/303 (39%), Gaps = 33/303 (10%)
Query: 223 IWNLPIQPKIKLFLWKCCTKSLLVRGKI-GQFIGHNFDCV-FCRAPETLIHALLHCDLAT 280
IW L + PKIK FLW+C T +L ++ + I + C C ET+ H + +C
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 281 VVWFHFNIISG-----------NINSLIDWIISWKDIDEQISGLFAN-ILWQIWKAR--- 325
VW NII G N+N LI +S + I+W++WK+R
Sbjct: 97 SVWRSANIIIGNQWGPPSSFEDNLNRLIQ--LSKTQTTNSLDRFLPFWIMWRLWKSRNVF 154
Query: 326 --CDRCFSNAKILPMMVID-----QVNSTPNLLKHPLPSQPLERNIR----WSPPKAPYI 374
+C S + D N T + + P++ + R W+PP ++
Sbjct: 155 LFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWV 214
Query: 375 KINVDASFMDGKEIAGIGCIMYDDQANFLAASACNYRGQNAE-ECECWAIVKALQWSTSK 433
K N D+ + G G + + + + + E + ALQ +
Sbjct: 215 KCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAH 274
Query: 434 NIDYLHIESDNSNLVLTLNREQADIGWQAGKLIYKVRQLEENFIKVIYTHINREGNAKAD 493
+ Y+ ESD+ +LV +N + G LIY +R +NRE N+ AD
Sbjct: 275 GLRYVWFESDSKSLVTLINNGEDHS--LLGTLIYDIRHWMLKLPYCSLEFVNRERNSAAD 332
Query: 494 ILA 496
LA
Sbjct: 333 ALA 335
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 120/303 (39%), Gaps = 32/303 (10%)
Query: 223 IWNLPIQPKIKLFLWKCCTKSLLVRGKIGQ-FIGHNFDC-VFCRAPETLIHALLHCDLAT 280
IW L PKIK FLWK + +L + + I ++ C C+ ET H C A
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 281 VVWFHFNIISGNINSLIDWIISWKDIDEQISGLFAN-----------ILWQIWKARCDRC 329
VW I + + I ++ +S AN ILW++WK+R
Sbjct: 78 QVWRASGIPHQELRTTG--ITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLV 135
Query: 330 FSNAKILPMMVIDQ--------------VNSTPNLLKHPLPSQPLERNIRWSPPKAPYIK 375
F I + + V S + QP +W P + +IK
Sbjct: 136 FQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIK 195
Query: 376 INVDASFMDGKEIAGIGCIMYDDQANFLAAS-ACNYRGQNAEECECWAIVKALQWSTSKN 434
N D +F A G +M D+ ++ + A ++ E E A++ A+Q + S+
Sbjct: 196 YNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQG 255
Query: 435 IDYLHIESDNSNLVLTLNREQADIGWQAGKLIYKVRQLEENFIKVIYTHINREGNAKADI 494
+ E D+ + +N E+ + G I + R ++ F + ++ + R N ADI
Sbjct: 256 YRKVIFEGDSKQVEELMNNEKLNFG--RFNWIREGRFWQKRFEEAVFKWVPRTNNQPADI 313
Query: 495 LAK 497
LAK
Sbjct: 314 LAK 316