BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0640.1
(423 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 110 7e-26
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 87 2e-18
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 85 8e-18
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 72 1e-13
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 71 2e-13
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 110 bits (275), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 116/438 (26%), Positives = 181/438 (41%), Gaps = 69/438 (15%)
Query: 10 VQSGKDIKIWEDNWI---PETTG------PINNYNH-SGLNKVSQLI--TNNAWNDEVLN 57
V +G+DI IW W+ P + P Y S + KVS LI + W +V+
Sbjct: 129 VGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIE 188
Query: 58 ANFDIATQNLIKAI-PVNIEGKDQIKWKLTDSGKFTVKSMYQHL--------STNNINLD 108
F + LI + P D W T SG +TVKS Y L S ++
Sbjct: 189 MLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEP 248
Query: 109 PAEPNWKFIWSIPTVPRIKIFIWKICTKSLPVRVRIG-KYIDNN---INCPNCTNIETIE 164
P ++ IW T P+I+ F+WK + SLPV + +++ I CP+C ET+
Sbjct: 249 SLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK--ETVN 306
Query: 165 HALLHCALAKNIW----FHFNIISENINSI---TDWIF-------SWEKDSNLNYTSEDI 210
H L C A+ W + E +SI W+F WEK S L
Sbjct: 307 HLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQL------- 359
Query: 211 HFATILWIIWKVRCDHCFQHEVNDLNKIIKMIESFPRNNKISGEK---------NKKTIE 261
+LW +WK R + F+ + ++++ E +I E N+ +
Sbjct: 360 -VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCG 418
Query: 262 KWQPPPAQFIKINVDASFINITSNVGFSLIAHNTESKFIEAQVKSSRARNSEESEAMAIL 321
+W+PPP Q++K N DA++ G + N + E + +RA +S A L
Sbjct: 419 RWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKG---EVKWMGARALPKLKSVLEAEL 475
Query: 322 YGLEWA----KEQDLKYIIIESDNINIINHLNKKKNSVHWQSL-IHIKKAREIKRNFEKF 376
+ WA Y+I ESD+ +I LN N W SL I+ + + F +
Sbjct: 476 EAMRWAVLSLSRFQYNYVIFESDSQVLIEILN---NDEIWPSLKPTIQDLQRLLSQFTEV 532
Query: 377 LFKHTKRALNSHADKLAK 394
F R N+ A+++A+
Sbjct: 533 KFVFIPREGNTLAERVAR 550
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/468 (23%), Positives = 195/468 (41%), Gaps = 61/468 (13%)
Query: 1 MIDNLAIWE------VQSGKDIKIWEDNWI-PETTGPINNYNHSGLNKVSQLITNNA--- 50
++D +A+ + + G++I+I DN + P+N ++ L
Sbjct: 27 LLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMTINNLFERKGSYY 86
Query: 51 -WNDEVLNANFDIATQNLIKAIPVNIEGK-DQIKWKLTDSGKFTVKSMYQHL----STNN 104
W+D ++ D + I I + K D+I W +G++TV+S Y L STN
Sbjct: 87 FWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNI 146
Query: 105 INLDPAEPNWKF---IWSIPTVPRIKIFIWKICTKSLPVRVRI---GKYIDNNINCPNCT 158
++P + IW++P +P++K F+W+ +++L R+ G ID +CP C
Sbjct: 147 PAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDP--SCPRCH 204
Query: 159 NI-ETIEHALLHCALAKNIW-----------FHFNIISENINSITDWIFSWEKDSNLNYT 206
E+I HAL C A W N ENI++I +++ +D+ T
Sbjct: 205 RENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFV----QDT----T 256
Query: 207 SEDIHFATILWIIWKV---RCDHCFQHEVNDLNKIIKMIESFPRNNKISGEKNKKTIE-- 261
D H +W+IW++ R + F +K + ++ + + + +KKT
Sbjct: 257 MSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPT 316
Query: 262 --------KWQPPPAQFIKINVDASF-INITSNVGFSLIAHNTESKFIEAQVKSSRARNS 312
+W+ PPA ++K N DA F + G +I ++ + +K + N
Sbjct: 317 RQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNP 376
Query: 313 EESEAMAILYGLEWAKEQDLKYIIIESDNINIINHLNKKKNSVHWQSLIHIKKAREIKRN 372
E+E A+L L+ + + +E D +IN +N S H H++
Sbjct: 377 LEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGI--SFHSSLANHLEDISFWANK 434
Query: 373 FEKFLFKHTKRALNSHADKLAKWARKKNRNKKWINIPCILIDKY-CNN 419
F F +R N A LAK+ + I +D+Y CN+
Sbjct: 435 FASIQFGFIRRKGNKLAHVLAKYGCTYSTFYSGSGSLPIWLDRYFCND 482
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 84.7 bits (208), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 133/309 (43%), Gaps = 41/309 (13%)
Query: 117 IWSIPTVPRIKIFIWKICTKSLPVRVRIG-KYIDNNINCPNCTNI-ETIEHALLHCALAK 174
IW + T P+IK F+WK+ + +L + ++I N+ C C ET +H C A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 175 NIWFHFNIISENINSITDWIFSWEKDSNL-------NYTSEDIHFAT-ILWIIWKVRCDH 226
+W I + + + + E L N + + A ILW +WK R
Sbjct: 78 QVWRASGIPHQELRTTG---ITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQL 134
Query: 227 CFQ-----------------HEVNDLNKIIKMIESFPRNNKISGEKNKKTI---EKWQPP 266
FQ E D N ++ + N ++ ++++ KWQ P
Sbjct: 135 VFQQKSISWQNTLQRARNDVQEWEDTNTYVQSL-----NQQVHSSRHQQPTMARTKWQRP 189
Query: 267 PAQFIKINVDASFINITSNVGFSLIAHNTESKFI-EAQVKSSRARNSEESEAMAILYGLE 325
P+ +IK N D +F + T N + + ++ Q S +S ESE A++ ++
Sbjct: 190 PSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQ 249
Query: 326 WAKEQDLKYIIIESDNINIINHLNKKKNSVHWQSLIHIKKAREIKRNFEKFLFKHTKRAL 385
A Q + +I E D+ + +N +K +++ I++ R ++ FE+ +FK R
Sbjct: 250 HAWSQGYRKVIFEGDSKQVEELMNNEK--LNFGRFNWIREGRFWQKRFEEAVFKWVPRTN 307
Query: 386 NSHADKLAK 394
N AD LAK
Sbjct: 308 NQPADILAK 316
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 133/304 (43%), Gaps = 32/304 (10%)
Query: 117 IWSIPTVPRIKIFIWKICTKSLPVRVRI-GKYIDNNINCPNCT-NIETIEHALLHCALAK 174
IW + P+IK F+W+ T +L R+ + ID + C C ETI H + +C +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 175 NIWFHFNIISEN----INSITD---WIFSWEKDSNLNYTSEDIHFATILWIIWKVRCDHC 227
++W NII N +S D + K N + F I+W +WK R
Sbjct: 97 SVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFW-IMWRLWKSRNVFL 155
Query: 228 FQHEVN----DLNKIIKMIESFPRNNKISGEKN-----------KKTIEKWQPPPAQFIK 272
FQ + + K I+ + N+ + N ++ +W PPP ++K
Sbjct: 156 FQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVK 215
Query: 273 INVDASFINIT--SNVGFSLIAHNTESKFIE-AQVKSSRARNSEESEAMAILYGLEWAKE 329
N D+ + + + G+++ N A+++SS S +EA+ L+ L+
Sbjct: 216 CNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTC--SLHAEALGFLHALQVIWA 273
Query: 330 QDLKYIIIESDNINIINHLNKKKNSVHWQSLIHIKKAREIKRNFEKFLFKHTKRALNSHA 389
L+Y+ ESD+ +++ +N ++ +LI+ + +K + F + +R NS A
Sbjct: 274 HGLRYVWFESDSKSLVTLINNGEDHSLLGTLIYDIRHWMLKLPYCSLEFVNRER--NSAA 331
Query: 390 DKLA 393
D LA
Sbjct: 332 DALA 335
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 116/262 (44%), Gaps = 26/262 (9%)
Query: 152 INCPNCTNIETIEHALLHCALAKNIWFHFNIISENINSITD-------WIFSWEKD-SNL 203
+ CP+ ET+ H L C A+ +W I + TD W+ + E + L
Sbjct: 13 VRCPDSR--ETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKL 70
Query: 204 NYTSEDIHFATILWIIWKVRCDHCFQHEVND----LNKIIKMIESFPRNNKISGEKNKKT 259
+ + +LW +WK R + F+ + D L + ++ E + ++ G+ +
Sbjct: 71 GKIGNLVPW--LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQ 128
Query: 260 IEK-----WQPPPAQFIKINVDASFINITSNVGFSLIAHNTESKFIEAQVKS-SRARNSE 313
+E+ W+ PP Q++K N DA++ G I N + ++ R +N
Sbjct: 129 VERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVL 188
Query: 314 ESEAMAILYGLEWAKEQDLKYIIIESDNINIINHLNKKKNSVHWQSL-IHIKKAREIKRN 372
E+E A+ + + + K II ESD ++N LN W +L ++ +++ +
Sbjct: 189 EAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDD---FWPTLQPALEDIQQLLHH 245
Query: 373 FEKFLFKHTKRALNSHADKLAK 394
FE+ F+ T R N AD++A+
Sbjct: 246 FEEVKFEFTPRGGNKVADRIAR 267