BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0660.1
(678 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 282 1e-82
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 282 1e-82
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 124 8e-32
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 90 1e-20
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 55 5e-09
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 282 bits (721), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/466 (36%), Positives = 248/466 (53%), Gaps = 63/466 (13%)
Query: 1 MQEEMESLHKNKTWEVVPLPEGKSVIGCKWVYKKKEDSSEINGT--RYKARLVAKGYAQK 58
M +E+ ++ TWE+ LP K IGCKWVYK K +S +GT RYKARLVAKGY Q+
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNS---DGTIERYKARLVAKGYTQQ 158
Query: 59 EGVDYNEIFSPVVKHTSIRVLLSIVSHRDLELEQLDVKTAFLHGDLEEEIYMAQPEGYKV 118
EG+D+ E FSPV K TS++++L+I + + L QLD+ AFL+GDL+EEIYM P GY
Sbjct: 159 EGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAA 218
Query: 119 EGKE----NQVCRLRKSLYGLKQSPRQWYKRFDFFMVKHGFRRSDYDCCVYIKKLREGDF 174
+ N VC L+KS+YGLKQ+ RQW+ +F ++ GF +S D Y K+ F
Sbjct: 219 RQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSD-HTYFLKITATLF 277
Query: 175 IYLLLYVDDMLITSRSMVEINKLKSQLSQMFEMKDMGAAKKILGMEIKRERSSKKLYLNQ 234
+ +L+YVDD++I S + +++LKSQL F+++D+G K LG+EI RS+ + + Q
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIA--RSAAGINICQ 335
Query: 235 KGYIERVVSRFGMQNAKAVSTPLAPHFRLSGRQSPTTTVEKDHMDRVPYASAVGSLMYAM 294
+ Y ++ G+ K S P+ P S D +D Y +G LMY
Sbjct: 336 RKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG------GDFVDAKAYRRLIGRLMYLQ 389
Query: 295 VCTRPDISQAVSMVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFGGDT-CQVSGYVDS 353
+ TR DIS AV+ +S+F P H +AV +L Y+KGTV GL + Q+ + D+
Sbjct: 390 I-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDA 448
Query: 354 DYAGDLDRRRSTTDYVFRVHGAPGI-----KQECVD------------------------ 384
+ D RRST Y + G I KQ+ V
Sbjct: 449 SFQSCKDTRRSTNGYCMFL-GTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQF 507
Query: 385 -------------VWCDSQSAIYLAKNQVHHARTKHIDVRYHFVRD 417
++CD+ +AI++A N V H RTKHI+ H VR+
Sbjct: 508 FRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 282 bits (721), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/466 (36%), Positives = 248/466 (53%), Gaps = 63/466 (13%)
Query: 1 MQEEMESLHKNKTWEVVPLPEGKSVIGCKWVYKKKEDSSEINGT--RYKARLVAKGYAQK 58
M +E+ ++ TWE+ LP K IGCKWVYK K +S +GT RYKARLVAKGY Q+
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNS---DGTIERYKARLVAKGYTQQ 158
Query: 59 EGVDYNEIFSPVVKHTSIRVLLSIVSHRDLELEQLDVKTAFLHGDLEEEIYMAQPEGYKV 118
EG+D+ E FSPV K TS++++L+I + + L QLD+ AFL+GDL+EEIYM P GY
Sbjct: 159 EGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAA 218
Query: 119 EGKE----NQVCRLRKSLYGLKQSPRQWYKRFDFFMVKHGFRRSDYDCCVYIKKLREGDF 174
+ N VC L+KS+YGLKQ+ RQW+ +F ++ GF +S D Y K+ F
Sbjct: 219 RQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSD-HTYFLKITATLF 277
Query: 175 IYLLLYVDDMLITSRSMVEINKLKSQLSQMFEMKDMGAAKKILGMEIKRERSSKKLYLNQ 234
+ +L+YVDD++I S + +++LKSQL F+++D+G K LG+EI RS+ + + Q
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIA--RSAAGINICQ 335
Query: 235 KGYIERVVSRFGMQNAKAVSTPLAPHFRLSGRQSPTTTVEKDHMDRVPYASAVGSLMYAM 294
+ Y ++ G+ K S P+ P S D +D Y +G LMY
Sbjct: 336 RKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG------GDFVDAKAYRRLIGRLMYLQ 389
Query: 295 VCTRPDISQAVSMVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFGGDT-CQVSGYVDS 353
+ TR DIS AV+ +S+F P H +AV +L Y+KGTV GL + Q+ + D+
Sbjct: 390 I-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDA 448
Query: 354 DYAGDLDRRRSTTDYVFRVHGAPGI-----KQECVD------------------------ 384
+ D RRST Y + G I KQ+ V
Sbjct: 449 SFQSCKDTRRSTNGYCMFL-GTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQF 507
Query: 385 -------------VWCDSQSAIYLAKNQVHHARTKHIDVRYHFVRD 417
++CD+ +AI++A N V H RTKHI+ H VR+
Sbjct: 508 FRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 124 bits (311), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 112/195 (57%), Gaps = 11/195 (5%)
Query: 175 IYLLLYVDDMLITSRSMVEINKLKSQLSQMFEMKDMGAAKKILGMEIKRERSSKKLYLNQ 234
+YLLLYVDD+L+T S +N L QLS F MKD+G LG++IK S L+L+Q
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQ 58
Query: 235 KGYIERVVSRFGMQNAKAVSTPLAPHFRLSGRQSPTTTVEKDHMDRVPYASAVGSLMYAM 294
Y E++++ GM + K +STPL L S +T D D + S VG+L Y +
Sbjct: 59 TKYAEQILNNAGMLDCKPMSTPLP----LKLNSSVSTAKYPDPSD---FRSIVGALQY-L 110
Query: 295 VCTRPDISQAVSMVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFGGDT-CQVSGYVDS 353
TRPDIS AV++V + M P ++ +K VLRY+KGT+ GL ++ V + DS
Sbjct: 111 TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDS 170
Query: 354 DYAGDLDRRRSTTDY 368
D+AG RRSTT +
Sbjct: 171 DWAGCTSTRRSTTGF 185
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 90.1 bits (222), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 68/94 (72%), Gaps = 7/94 (7%)
Query: 1 MQEEMESLHKNKTWEVVPLPEGKSVIGCKWVYKKKEDSSEINGT--RYKARLVAKGYAQK 58
MQEE+++L +NKTW +VP P ++++GCKWV+K K S +GT R KARLVAKG+ Q+
Sbjct: 44 MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHS---DGTLDRLKARLVAKGFHQE 100
Query: 59 EGVDYNEIFSPVVKHTSIRVLLSIVSHRDLELEQ 92
EG+ + E +SPVV+ +IR +L++ + LE+ Q
Sbjct: 101 EGIYFVETYSPVVRTATIRTILNVA--QQLEVGQ 132
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 55.1 bits (131), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 291 MYAMVCTRPDISQAVSMVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFGGDT-CQVSG 349
MY + TRPD++ AV+ +S+F + +AV VL Y+KGTV GL + + Q+
Sbjct: 1 MY-LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 59
Query: 350 YVDSDYAGDLDRRRSTTDY 368
+ DSD+A D RRS T +
Sbjct: 60 FADSDWASCPDTRRSVTGF 78