BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0720.1
(526 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 169 6e-46
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 97 4e-21
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 94 5e-21
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 89 7e-19
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 81 3e-16
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 169 bits (429), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 145/523 (27%), Positives = 232/523 (44%), Gaps = 46/523 (8%)
Query: 24 KKKWHNFHTINWNSIWKPRNQGGLGLRLPQLDNQAFLHKLNWRIVKNPEAIWVQVLKGKY 83
K++ H W+ + + +GG+G + + N A L K WR++ PE++ +V K +Y
Sbjct: 33 KQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRY 92
Query: 84 FHNSAQPTRP-KNHHSWTWKSISKYHHNLDSLIFWNINKGEHINIWSDYWIPNHP----- 137
FH S P + S+ WKSI L + GE I IW W+ + P
Sbjct: 93 FHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAAL 152
Query: 138 -----PPITNERGCTIEMVSQLI--TNGTWNTNLINMCFNNEICRSILSINLNPNEE--- 187
PP +I VS LI + W ++I M F E+ R ++ L P
Sbjct: 153 RMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLF-PEVERKLIG-ELRPGGRRIL 210
Query: 188 DNAIWTLTKSGNFSLKSMYNFLRN--------QTIYNNHAQMDWFFIWNMNTIPRIKLFL 239
D+ W T SG++++KS Y L Q + + IW T P+I+ FL
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFL 270
Query: 240 WKCCTNSLPVRAKIG-KFIGNNYSCVNCNE-EETLDHVMLHCSFAKAVWFNINIR----- 292
WKC +NSLPV + + + +C+ C +ET++H++ C+FA+ W +I
Sbjct: 271 WKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGG 330
Query: 293 --TDTIITTTQWI---QQWKPLEENNINLYAKILWFLWKARCENCFTMNKQNPLQIIERI 347
D+I W+ P E L +LW LWK R E F + N +++ R
Sbjct: 331 EWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRA 390
Query: 348 MNTSTT-PLRT--ESITIKKGKEKTITQTWRPPSTPYMKINVDASFININEPAGIGYIIR 404
+ +RT ES K ++ WRPP ++K N DA++ NE GIG+++R
Sbjct: 391 EDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLR 450
Query: 405 D--AEANYIIAVADTVRGQHAEECESLAILSSLKEALQLQIQYVHIESDNQAIILALNGK 462
+ E ++ A A + + E E A+ ++ + Q YV ESD+Q +I LN
Sbjct: 451 NEKGEVKWMGARA-LPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNND 509
Query: 463 GGNLHWQTQSIIHQIKDIKDSFTGTIFTRISRNCNTYADALAK 505
+ + I ++ + FT F I R NT A+ +A+
Sbjct: 510 --EIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVAR 550
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 119/490 (24%), Positives = 204/490 (41%), Gaps = 64/490 (13%)
Query: 79 LKGKYFHN-SAQPTRPKNHHSWTWKSISKYHHNLDSLIFWNINKGEHINIWSDYWIPNHP 137
+K +YF + S + + S+ W S+ L I G++I I D + +HP
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 138 P-PITNERGCTIEMVSQLITNGT----WNTNLINMCFNNEICRSILSINLNPNEE-DNAI 191
P P+ E ++ L W+ + I+ + I I L +++ D I
Sbjct: 61 PRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKII 120
Query: 192 WTLTKSGNFSLKSMYNFLRNQTIYN------NHAQMDW-FFIWNMNTIPRIKLFLWKCCT 244
W +G ++++S Y L + N H +D IWN+ +P++K FLW+ +
Sbjct: 121 WNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALS 180
Query: 245 NSLPVRAKI-GKFIGNNYSCVNCNEE-ETLDHVMLHCSFAKAVWFNINIRTDTIITTTQW 302
+L ++ + + + SC C+ E E+++H + C FA W +D+ + Q
Sbjct: 181 QALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW----RLSDSSLIRNQL 236
Query: 303 IQQWKPLEENNINL-----------YAKIL-----WFLWKARCENCFTMNKQNPLQIIER 346
+ EEN N+ + K+L W +WKAR F +++P + +
Sbjct: 237 MSN--DFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLS 294
Query: 347 I-------MNTSTTPLRTESITIKKGKEKTITQTWRPPSTPYMKINVDASFININEPAGI 399
+N + + +T S T + + K WR P Y+K N DA F A
Sbjct: 295 AKAETHDWLNATQSHKKTPSPTRQIAENKI---EWRNPPATYVKCNFDAGFDVQKLEATG 351
Query: 400 GYIIRDAEANYII-AVADTVRGQHAEECESLAILSSLKEALQLQIQYVHIESDNQAIILA 458
G+IIR+ I + E E+ A+L++L++ V +E D Q +I
Sbjct: 352 GWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINL 411
Query: 459 LNGKGGNLHWQTQSIIHQIKDIK---DSFTGTIFTRISRNCNTYADALAKWGRTH----- 510
+NG + H S+ + ++DI + F F I R N A LAK+G T+
Sbjct: 412 INGI--SFH---SSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYS 466
Query: 511 --GHKKIWQD 518
G IW D
Sbjct: 467 GSGSLPIWLD 476
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 94.0 bits (232), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 135/292 (46%), Gaps = 26/292 (8%)
Query: 232 IPRIKLFLWKCCTNSLPVRAK-IGKFIGNNYSCVNCNEEETLDHVMLHCSFAKAVWFNIN 290
+P+IKLFLWK +LPV A+ + + I + + C C ET H++ HC FA VW
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 291 IRTDTIITTTQWIQQ---------WKPLEENNINLYAKILWFLWKARCENCFTMNKQNPL 341
++ I T ++ P+ + L+ I W +WKAR + F + +
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIF---QNSHF 117
Query: 342 QIIERIMNTSTTPLRTESITIKKGKEKTITQTWRPPSTPYMKIN----VDASFININEPA 397
+IE + L +S + K + T RP ST + + VDA++ + A
Sbjct: 118 SVIETVTKAVQDALAWQSAQLALPKVRVATP--RPNSTTTLTHDFLCYVDAAWQQQSSLA 175
Query: 398 GIGYIIRD---AEANYIIAVADTVRGQHAEECESLAILSSLKEALQLQIQYVHIESDNQA 454
G G++ + +E A R E+ AI S++ ALQL+ + + SD+++
Sbjct: 176 GSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKS 235
Query: 455 IILALNGKGGNLHW-QTQSIIHQIKDIKDSFTGTIFTRISRNCNTYADALAK 505
I+ ALN N+ + ++ +I+ I++ F F I R N+ ADA AK
Sbjct: 236 IVDALN---SNVSLNEIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAK 284
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 139/320 (43%), Gaps = 36/320 (11%)
Query: 226 IWNMNTIPRIKLFLWKCCTNSLPVRAKI-GKFIGNNYSCVNCN-EEETLDHVMLHCSFAK 283
IW ++ P+IK FLW+C T +L ++ + I + C C EEET+ H+M +C + +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 284 AVWFNINIRTDTIITTTQW-------------IQQWKPLEENNINLYAK--ILWFLWKAR 328
+VW R+ II QW IQ K N+++ + I+W LWK+R
Sbjct: 97 SVW-----RSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSR 151
Query: 329 CENCFTMNKQNPLQIIERIMNTSTTPLR----TESITIKKG-----KEKTITQTWRPPST 379
F Q+P + + +T L TE+ + + + W PP
Sbjct: 152 NVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPE 211
Query: 380 PYMKINVDASFININEPAGIGYIIRDAEANYIIAVADTVRGQHAE-ECESLAILSSLKEA 438
++K N D+ + + G+ IR+ + ++ ++ E+L L +L+
Sbjct: 212 GWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVI 271
Query: 439 LQLQIQYVHIESDNQAIILALNGKGGNLHWQTQSIIHQIKDIKDSFTGTIFTRISRNCNT 498
++YV ESD+++++ +N G H ++I+ I+ ++R N+
Sbjct: 272 WAHGLRYVWFESDSKSLVTLIN--NGEDHSLLGTLIYDIRHWMLKLPYCSLEFVNRERNS 329
Query: 499 YADALAKWGRTHGHKKIWQD 518
ADALA H ++Q
Sbjct: 330 AADALA--SHVHARDPLFQS 347
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 133/307 (43%), Gaps = 35/307 (11%)
Query: 226 IWNMNTIPRIKLFLWKCCTNSLPVRAKIG-KFIGNNYSCVN-CNEEETLDHVMLHCSFAK 283
IW + T P+IK FLWK + +L + + I N+ C C E+ET H+ C +A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 284 AVWFNINIRTDTIITTTQWIQQWKPL---------EENNINLYAKILWFLWKARCENCFT 334
VW I + TT ++ L + NL ILW LWK+R + F
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 335 MNK---QNPLQIIERIM------NTSTTPLRTESITIKKGKEKTITQT-WRPPSTPYMKI 384
QN LQ + NT L + + + ++ T+ +T W+ P + ++K
Sbjct: 138 QKSISWQNTLQRARNDVQEWEDTNTYVQSL-NQQVHSSRHQQPTMARTKWQRPPSTWIKY 196
Query: 385 NVDASFININEPAGIGYIIRDAEANYI---IAVADTVRGQHAEECESLAILSSLKEALQL 441
N D +F + A G+++RD Y+ A+ T + E E A++ +++ A
Sbjct: 197 NYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSD--SLESEFQALIIAMQHAWSQ 254
Query: 442 QIQYVHIESDNQAIILALNGKG---GNLHWQTQSIIHQIKDIKDSFTGTIFTRISRNCNT 498
+ V E D++ + +N + G +W I + + + F +F + R N
Sbjct: 255 GYRKVIFEGDSKQVEELMNNEKLNFGRFNW-----IREGRFWQKRFEEAVFKWVPRTNNQ 309
Query: 499 YADALAK 505
AD LAK
Sbjct: 310 PADILAK 316