BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0830.1
(185 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 59 8e-11
AT2G33160.1 | glycoside hydrolase family 28 protein / polygalact... 60 9e-11
AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 54 8e-09
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 54 1e-08
AT1G04625.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 51 8e-08
>AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:1535561-1536226 FORWARD
LENGTH=221 | 201606
Length = 221
Score = 59.3 bits (142), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 29 NQKWRPPSTPFLKFNVDTSFATITEPASIGCIIHDADANFIMAAADSI--RCQNAEECES 86
+QKW P ++K N D SF T+ + G +I D D F AA ++ NA E E
Sbjct: 60 HQKWEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRD-DKGFYKGAAQAVGGTMNNALESEL 118
Query: 87 IVVHSSMLWAIQLGNSHIHIESDNQTVIQYINGNGEGLHWQSKKILKQVIALKDKVQGII 146
+ +M G + E D++ V + +N + +H+ + +++ + + + +I
Sbjct: 119 QALVMAMQHTWSQGYRKVIFEGDSKQVEELLNR--KQMHFGAFNWIREAWSWSKRFEEVI 176
Query: 147 FTYTPRENNIQADALAKWGRSHGQRVIWNVVPSFVPKLL 185
F++TPR NN AD LAK SH + + FVP +
Sbjct: 177 FSWTPRTNNQPADMLAK---SHLPQDTSFIYHYFVPNFI 212
>AT2G33160.1 | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
Chr2:14053404-14056246 FORWARD LENGTH=664 | 201606
Length = 664
Score = 60.5 bits (145), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Query: 32 WRPPSTPFLKFNVDTSFATITEPASIGCIIHDADANFIMAAADSIRC-QNAEECESIVVH 90
WR P+ ++K NVD SF P G I+ D + + A C NA ECE +
Sbjct: 503 WRRPTNGWVKCNVDGSFINGNIPGKGGWIVRDHNGRYEFAGQAIGNCIDNALECEFQALL 562
Query: 91 SSMLWAIQLGNSHIHIESDNQTVIQYINGNGEGLHWQSKKILKQVIALKDKVQGIIFTYT 150
+M G I E DN+ + I NG +H+ + ++ ++ K + F +T
Sbjct: 563 MAMQHCWSKGYRRICFEGDNKEMFDLI--NGLKMHFGAFNWIRDILWWASKFEQTQFQWT 620
Query: 151 PRENNIQADALAK 163
R+NN AD LA+
Sbjct: 621 NRQNNKPADILAR 633
>AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:9706657-9707298 REVERSE
LENGTH=213 | 201606
Length = 213
Score = 53.5 bits (127), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 3/141 (2%)
Query: 24 RAKPKNQKWRPPSTPFLKFNVDTSFATITEPASIGCIIHDADANFIMAA-ADSIRCQNAE 82
R + + +WR P ++K N D SF + G ++ D++ ++++A A + NA
Sbjct: 44 REEDNHDRWRRPERGWIKCNFDGSFVNGDVKSKAGWVVRDSNGSYLLAGQAIGRKVDNAL 103
Query: 83 ECESIVVHSSMLWAIQLGNSHIHIESDNQTVIQYINGNGEGLHWQSKKILKQVIALKDKV 142
E E + SM G + E DN+ + ING+ +++ ++ + K
Sbjct: 104 ESEIQALIISMQHCWSHGYKRVCFEGDNKMLFDLINGS--KVYFGVHNWIRDIHWWLRKF 161
Query: 143 QGIIFTYTPRENNIQADALAK 163
+ I F + R +N AD LAK
Sbjct: 162 ESIHFNWIRRHHNTPADILAK 182
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 53.5 bits (127), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
Query: 28 KNQKWRPPSTPFLKFNVDTSFATITEPASIGCIIHDADANFIMAAADSIRCQ-NAEECES 86
+N KW PP LK N D S + +G I+ ++ I + + EE E
Sbjct: 101 RNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAEC 160
Query: 87 IVVHSSMLWAIQ----LGNSHIHIESDNQTVIQYINGNGEGLHWQSKKILKQVIALKDKV 142
S+++WAIQ G+ + E DNQT+ + IN Q L + +
Sbjct: 161 ----STLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQ--HFLDTIQSWIPSF 214
Query: 143 QGIIFTYTPRENNIQADALAKWG-RSHGQRVIWNVVPSFV 181
+ I F++ RE N AD LAK + + Q +++ P F+
Sbjct: 215 ESIEFSFKHREQNGCADFLAKQAIKENTQWSLFHSCPYFL 254
>AT1G04625.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:1287831-1289820 REVERSE
LENGTH=257 | 201606
Length = 257
Score = 51.2 bits (121), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 14/144 (9%)
Query: 26 KPKNQKWRPPSTPFLKFNVDTSFATITEPASIGCIIHDADANFIMAAA--DSIRCQNAE- 82
+P W P + K N D ++ + P+ G ++ D F+ AA SI E
Sbjct: 76 EPTANLWTTPPIGWTKCNYDGTYHS-NAPSKAGWLLRDDRGTFLGAAHAIGSITTNPMES 134
Query: 83 ECESIVVHSSMLWAIQLGNSHIHIESDNQTVIQYING---NGEGLHWQSKKILKQVIALK 139
E +++V+ W+ G I+ E DN+ V + +NG N +W ++ + A +
Sbjct: 135 ELQALVMAMQHCWS--RGYRKIYFEGDNKEVSEIVNGRSSNFAVFNW-----IRDISAWR 187
Query: 140 DKVQGIIFTYTPRENNIQADALAK 163
K + FT+T R +N+ ADALAK
Sbjct: 188 SKFEECKFTWTRRFSNMAADALAK 211