BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0870.1
(271 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 102 5e-26
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 52 1e-07
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 52 2e-07
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 102 bits (255), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 12/210 (5%)
Query: 16 NVHHSDSPTTVLITPLLTG-DNYASWSRGMTKALRAKDKLGFVDETIVKPTSPTELHS-W 73
++HH P+ I L DNY +W LR K GF+D T+ KP + L+ W
Sbjct: 23 DIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPW 79
Query: 74 SRYNDLVASWILNSVAPNIQSSILYDESAAETWKNLHERFFQTNAPKIFQLNRAISSLKQ 133
+ N +V W++NS+ + S++Y E+A + W++L F KI+QL R +++L+Q
Sbjct: 80 EQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQ 139
Query: 134 EGLDVSTYFTQLKSLEDEIQSLMSVKPCICVH-----GKSLIDRVNQERAMEFLQG--LN 186
G V YF +L + E+ + C C K + +E+ EFL G LN
Sbjct: 140 GGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLN 199
Query: 187 ERFSAIRSQIFLMDPFPSILRIHSLVKQEE 216
+ F A+ ++I P PS+ ++VK E
Sbjct: 200 QGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 21/208 (10%)
Query: 36 NYASWSRGMTKALRAKDKLGFVDETIVKPTSPTELHSWSRYNDLVASWILNSVAPN-IQS 94
NY +W + D +G +D T++ PT+ +++ W + + +V + ++ P Q
Sbjct: 30 NYDAWRELFLTHCLSFDVMGHIDGTLL-PTNANDVN-WQKRDGIVKLSLYGTLTPKQFQG 87
Query: 95 SILYDESAAETWKNLHERFFQTNAPKIFQLNRAISSLKQEGLDVSTYFTQLKSLEDEIQS 154
S + ++ + W + +F + +L+ + + + V+ Y+ ++K L D +++
Sbjct: 88 SFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRN 147
Query: 155 LMSVKPCICVHGKSLIDRVNQERAMEFLQGLNERFSAIRSQIFLMDPFPSILRIHSLVKQ 214
+ + V ++L+ M L GLN +F I + I PFPS +++++
Sbjct: 148 V-----DVPVTDRNLV--------MYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQE 194
Query: 215 EEVQ-QNIMNSNP----HGAEEATLAVS 237
EE + + + NP H + LA S
Sbjct: 195 EEDRLKRAIKPNPTHVDHSSSSTVLACS 222
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 16/192 (8%)
Query: 26 VLITPLLTGDNYASWSRGMTKALRAKDKLGFVDETIVKPTSPTELHSWSRYNDLVASWIL 85
+ +T L NY W + LG +D + PT TE W + LV WI
Sbjct: 22 IFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSST-PTPMTE-KRWKERDGLVKMWIY 79
Query: 86 NSVAPNIQSSIL-YDESAAETWKNLHERFFQTNAPKIFQLNRAISSLKQEGLDVSTYFTQ 144
++ ++ +I+ +A + W +L F + Q + + + L V Y +
Sbjct: 80 GTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQK 139
Query: 145 LKSLEDEIQSLMSVKPCICVHGKSLIDRVNQERAMEFLQGLNERFSAIRSQIFLMDPFPS 204
LKSL D + ++ S + DRV M L GL E++ I + I PFPS
Sbjct: 140 LKSLSDLLTNVDS----------PISDRV---LVMHLLNGLTEKYDYILNVIKHKSPFPS 186
Query: 205 ILRIHSLVKQEE 216
S++ EE
Sbjct: 187 FTEARSMLLMEE 198