BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0910.1
(390 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 155 3e-41
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 155 3e-41
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 115 1e-30
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 53 2e-08
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 155 bits (393), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 15/179 (8%)
Query: 217 QRPKYIPDHVAH---------------YTICHPLSYVFMVVLNKFHEPTSFKEASKSVEW 261
++P Y+ D+ H Y PL + F+V + K EP+++ EA + + W
Sbjct: 39 RKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVW 98
Query: 262 SNAMKEEFLALEKNQTWSLVPFEPSMNVLGCKWIYKVKQRSDGSLERFKDRLVAKGYHQE 321
AM +E A+E TW + P+ +GCKW+YK+K SDG++ER+K RLVAKGY Q+
Sbjct: 99 CGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQ 158
Query: 322 DGIDYNETLGPVVKSTSVRLILTIAVTKSWVIKQLDVSNVFLHGVLKEKVYMTQPLGFV 380
+GID+ ET PV K TSV+LIL I+ ++ + QLD+SN FL+G L E++YM P G+
Sbjct: 159 EGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 155 bits (393), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 15/179 (8%)
Query: 217 QRPKYIPDHVAH---------------YTICHPLSYVFMVVLNKFHEPTSFKEASKSVEW 261
++P Y+ D+ H Y PL + F+V + K EP+++ EA + + W
Sbjct: 39 RKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVW 98
Query: 262 SNAMKEEFLALEKNQTWSLVPFEPSMNVLGCKWIYKVKQRSDGSLERFKDRLVAKGYHQE 321
AM +E A+E TW + P+ +GCKW+YK+K SDG++ER+K RLVAKGY Q+
Sbjct: 99 CGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQ 158
Query: 322 DGIDYNETLGPVVKSTSVRLILTIAVTKSWVIKQLDVSNVFLHGVLKEKVYMTQPLGFV 380
+GID+ ET PV K TSV+LIL I+ ++ + QLD+SN FL+G L E++YM P G+
Sbjct: 159 EGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 115 bits (289), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 83/141 (58%), Gaps = 18/141 (12%)
Query: 208 MTTRSKNGIQR--PKYIPDHVAHYTICHPLSYVFMVVLNKFHEPTSFKEASKSVEWSNAM 265
M TRSK GI + PKY S + K EP S A K W AM
Sbjct: 1 MLTRSKAGINKLNPKY--------------SLTITTTIKK--EPKSVIFALKDPGWCQAM 44
Query: 266 KEEFLALEKNQTWSLVPFEPSMNVLGCKWIYKVKQRSDGSLERFKDRLVAKGYHQEDGID 325
+EE AL +N+TW LVP + N+LGCKW++K K SDG+L+R K RLVAKG+HQE+GI
Sbjct: 45 QEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIY 104
Query: 326 YNETLGPVVKSTSVRLILTIA 346
+ ET PVV++ ++R IL +A
Sbjct: 105 FVETYSPVVRTATIRTILNVA 125
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 53.1 bits (126), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 17 NRHVTEMGNTLLIQTALPNCFWFDAFSTATYIINRLPTPILGNISPFETLFHKSPDYTSM 76
NR + E ++L + LP F DA +TA +IIN+ P+ + P E F P Y+ +
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 77 KVFGSVCYPYLAHSRTDKLSPKSVK 101
+ FG V Y H KL P++ K
Sbjct: 62 RRFGCVAY---IHCDEGKLKPRAKK 83