BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0930.1
(142 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 128 6e-35
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 128 6e-35
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 119 7e-34
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 65 3e-14
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 128 bits (321), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Query: 2 QEPRSSQYSIVKKILKYLKGSIGSGITINPGDLSSIQAYSDSDWAGCPDTRRSTNGYCIF 61
+ PR + V KIL Y+KG++G G+ + +Q +SD+ + C DTRRSTNGYC+F
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466
Query: 62 LGSKLLSWSSKKQPTVAKSSTEAEYKALSLANTDVLWISYLMDELHLPLSLSKPFVLLCD 121
LG+ L+SW SKKQ V+KSS EAEY+ALS A +++W++ EL LP LSKP +L CD
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP--LSKPTLLFCD 524
Query: 122 D 122
+
Sbjct: 525 N 525
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 128 bits (321), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Query: 2 QEPRSSQYSIVKKILKYLKGSIGSGITINPGDLSSIQAYSDSDWAGCPDTRRSTNGYCIF 61
+ PR + V KIL Y+KG++G G+ + +Q +SD+ + C DTRRSTNGYC+F
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466
Query: 62 LGSKLLSWSSKKQPTVAKSSTEAEYKALSLANTDVLWISYLMDELHLPLSLSKPFVLLCD 121
LG+ L+SW SKKQ V+KSS EAEY+ALS A +++W++ EL LP LSKP +L CD
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP--LSKPTLLFCD 524
Query: 122 D 122
+
Sbjct: 525 N 525
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 119 bits (297), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 74/100 (74%)
Query: 1 MQEPRSSQYSIVKKILKYLKGSIGSGITINPGDLSSIQAYSDSDWAGCPDTRRSTNGYCI 60
M EP + + ++K++L+Y+KG+I G+ I+ ++QA+ DSDWAGC TRRST G+C
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187
Query: 61 FLGSKLLSWSSKKQPTVAKSSTEAEYKALSLANTDVLWIS 100
FLG ++SWS+K+QPTV++SSTE EY+AL+L ++ W S
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSS 227
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 65.1 bits (157), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 5 RSSQYSIVKKILKYLKGSIGSGITINPGDLSSIQAYSDSDWAGCPDTRRSTNGYC 59
R++Q V K+L Y+KG++G G+ + ++A++DSDWA CPDTRRS G+C
Sbjct: 25 RTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGFC 79