BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0940.1
(650 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 129 3e-31
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 85 2e-17
AT1G40390.1 | DNAse I-like superfamily protein | Chr1:15432576-1... 70 2e-12
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 182/403 (45%), Gaps = 28/403 (6%)
Query: 142 LVIGDLNNILDMQEKQGGSQAS--DSHMSSILSIISQLELMDLGYQGNPYTWNNKQYGEN 199
+++GD + I + Q S + + + +L+D+ +G YTW+N Q +N
Sbjct: 222 ILVGDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQ-DDN 280
Query: 200 LIQERLDRALSNINWMTLYQYSSLSHLDSFGSDHLP-IMLGENHNINNKPKPFKFLRTWM 258
I +LDRA++N +W + + + S SDH P I++ EN +K K F++
Sbjct: 281 PIIRKLDRAIANGDWFSSFPSAIAVFELSGVSDHSPCIIILENLPKRSK-KCFRYFSFLS 339
Query: 259 NHPDCHDFIASKWNSTTNIQGELKKLSRHLTH-------WNKQVFGNIERNIKTITENIQ 311
HP + W + + L HL N+Q FGNI+ K ++++
Sbjct: 340 THPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLE 399
Query: 312 NNSNK------DELVKMYEQLEQ----LYLRQESLWKEKSKNNFILVGDKNTKYFHSQAI 361
+ ++ D L ++ + ES +++KS+ ++ GD NT++FH +
Sbjct: 400 SIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVIL 459
Query: 362 QRNRNNKIRAIKDNNGEWQEDINSINSIFTSHLMHINTTENTSIAPEILNLFQPSISPQQ 421
N I+ ++ ++ E++ + + ++ H+ +++ + P+ + + I P +
Sbjct: 460 ANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIK-DIHPFR 518
Query: 422 -----NFKLSAIPEEDEINKAISGLKKEAAPGPDGYPPFFFQANWDTVSIDIHSLVHQFF 476
+LSA+P + EI A+ + + APGPD + FF +W V + V +FF
Sbjct: 519 CNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFF 578
Query: 477 SDATLPNEANHTHICLIPKTASPQTPADYRPISLLNTTYKIIT 519
L N T I LIPK + +RP+S YKIIT
Sbjct: 579 RTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 522 LADRFKDTLKDIISPFQAAYIPGRQISDNIIIGQEIIHSMKKMKGATGYFGLKLDMSKAF 581
+ +R K + ++I P QA++IPGR +DNI+ QE +HSM++ KG G+ LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 582 DRIEWNFITGIMRKLGYSEHWIKMIDSCLSTSSMAVLINGRPAQHSIRPEALD 634
DRI W+++ + G+ E W+ I + GR A S RP D
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEIARSTFGARRVAPEVGR-ADASKRPRVSD 112
>AT1G40390.1 | DNAse I-like superfamily protein |
Chr1:15432576-15434674 REVERSE LENGTH=426 | 201606
Length = 426
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 14/235 (5%)
Query: 127 WKNLKILEVDAEM---PWLVIGDLNNILDMQEKQG--GSQASDSHMSSILSIISQLELMD 181
W ++ L + + PWLV+GD N I + E S S + + + + +L+D
Sbjct: 105 WDDITRLSASSPLCNSPWLVVGDFNQIASVTEHYSLMPSNISLQGLEDLQACMRDSDLVD 164
Query: 182 LGYQGNPYTWNNKQYGENLIQERLDRALSNINWMTLYQYSSLSHLDSFGSDHLPIMLGEN 241
L +G YTW+N Q +N I +LDRA+ N W+ + +S SDH M+ N
Sbjct: 165 LPCRGVLYTWSNHQQ-DNPILRKLDRAIVNGCWLATFPTASAIFDPPSDSDHAACMVILN 223
Query: 242 HNIN-NKPKPFKFLRTWMNHPDCHDFIASKWNSTTNIQGELKKLSRHLTHWNKQVFGNIE 300
++ +K K FK+ HPD I + W + + L L K G
Sbjct: 224 NSPPLSKKKSFKYFSFLSTHPDFISSILAAWQKEIAVGSFMFSLGELLKEAKKACRGLNR 283
Query: 301 RNIKTITENIQNNSNKDELVKMYEQLEQ-----LYLRQESLWKEKSKNNFILVGD 350
R I + SN + + E + + ES +K+KS+ ++ GD
Sbjct: 284 RGFSNIQAQLM--SNPSDFLFRAEHVARKNWNFFAAALESFYKQKSRIKWLKEGD 336