BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0950.1
(168 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 75 7e-16
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 74 8e-16
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 74 8e-16
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 74 1e-15
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 72 4e-15
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 74.7 bits (182), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 14 KYLGAQLFIGANKTNAFKDILQQIRKKLESWNHSFLSQAGRTIVIATIVAAVPRYQMQCF 73
+YLG L T+ + ++++IR ++ W LS AGR +I++++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 74 AIPKGVSKRIMTLQKSFWWGKSRGICTK---AWSSICLPKVLGGLGIHLPELDNKAMLSK 130
+P K I ++ SF W K AWS +C PK GGLGI + NK L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 131 LAWRVKAEPNAMWVRFLKV 149
L WR+ + ++WV++L++
Sbjct: 146 LIWRMLSS-TSLWVQWLRL 163
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 74.3 bits (181), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 14 KYLGAQLFIGANKTNAFKDILQQIRKKLESWNHSFLSQAGRTIVIATIVAAVPRYQMQCF 73
+YLG L T+ + ++++IR ++ W LS AGR +I++++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 AIPKGVSKRIMTLQKSFWWGKSRGICTK---AWSSICLPKVLGGLGIHLPELDNKAMLSK 130
+P K I ++ SF W K AWS +C PK GGLGI + NK L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 LAWRVKAEPNAMWVRFLKV 149
L WR+ + ++WV++L++
Sbjct: 200 LIWRMLSS-TSLWVQWLRL 217
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 74.3 bits (181), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 14 KYLGAQLFIGANKTNAFKDILQQIRKKLESWNHSFLSQAGRTIVIATIVAAVPRYQMQCF 73
+YLG L T+ + ++++IR ++ W LS AGR +I++++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 AIPKGVSKRIMTLQKSFWWGKSRGICTK---AWSSICLPKVLGGLGIHLPELDNKAMLSK 130
+P K I ++ SF W K AWS +C PK GGLGI + NK L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 LAWRVKAEPNAMWVRFLKV 149
L WR+ + ++WV++L++
Sbjct: 200 LIWRMLSS-TSLWVQWLRL 217
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 73.9 bits (180), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 14 KYLGAQLFIGANKTNAFKDILQQIRKKLESWNHSFLSQAGRTIVIATIVAAVPRYQMQCF 73
+YLG L T+ + ++++IR ++ W LS AGR +I++++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 AIPKGVSKRIMTLQKSFWWGKSRGICTK---AWSSICLPKVLGGLGIHLPELDNKAMLSK 130
+P K I ++ SF W K AWS +C PK GGLGI + NK L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 LAWRVKAEPNAMWVRFLKV 149
L WR+ + ++WV++L++
Sbjct: 200 LIWRMLS-STSLWVQWLRL 217
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 72.4 bits (176), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 64 AVPRYQMQCFAIPKGVSKRIMTLQKSFWW---GKSRGICTKAWSSICLPKVLGGLGIHLP 120
A+P Y M CF +PK V K+I+++ FWW +++G+ KAW + K GG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 121 ELDNKAMLSKLAWRVKAEPNAMWVRFLKVKYFPLTDPLG 159
E N A+L K WR+ + P ++ + K +YF +DPL
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLN 100