BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0960.1
(425 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 113 7e-27
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 96 3e-21
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 87 2e-18
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 75 6e-15
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 73 7e-14
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 113 bits (283), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 106/433 (24%), Positives = 188/433 (43%), Gaps = 55/433 (12%)
Query: 12 VHNGNNINIWKDSWIPEINT----------PLNHSNEANITRVAQLI--HNNDWNEEVLS 59
V NG +I IW+ W+ P +++ ++I +V+ LI +W ++V+
Sbjct: 129 VGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIE 188
Query: 60 RIFDSQTQNLIKAI-PIDAEGEDVRKWTLNKSGRFTVNSMYRYLSTSMN--------SPS 110
+F + LI + P D W SG +TV S Y L+ +N S
Sbjct: 189 MLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEP 248
Query: 111 LLNPNWKFIWKLPTIPRIQTFIWKICTKTLPVRKRIG----KFIDGNLNCPNCVEIESIE 166
LNP ++ IWK T P+IQ F+WK + +LPV + + CP+C E++
Sbjct: 249 SLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK--ETVN 306
Query: 167 HALLHCPLAKNIWFYFNII-------SENIIFVADWIFSWENTTPLNDRKNQNLLATILW 219
H L C A+ W +I +++I W+F+ N P ++ +Q L+ +LW
Sbjct: 307 HLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQ-LVPWLLW 365
Query: 220 IIWKIRCDHCFQHEINDLSHIIK---------MIQNFPKNDPMNVNKNKPEETKWIPPKQ 270
+WK R + F+ + +++ I+ ++ N+ +W PP
Sbjct: 366 RLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPH 425
Query: 271 GWLKINVDASFSNVHEITGTSLIIHDSDSKFIEAHTSIARSRNSEEGEAIAILNGLVWAV 330
W+K N DA+++ +E G ++ + E AR+ + A L + WAV
Sbjct: 426 QWVKCNTDATWNRDNERCGIGWVLRNEKG---EVKWMGARALPKLKSVLEAELEAMRWAV 482
Query: 331 ----EHNYKHIIIESDNINIIQNIKNSKHVVHWQSC-IHIQKINEIKRKLDRVTFNFSCR 385
Y ++I ESD+ +I+ + N + W S IQ + + + V F F R
Sbjct: 483 LSLSRFQYNYVIFESDSQVLIEILNNDE---IWPSLKPTIQDLQRLLSQFTEVKFVFIPR 539
Query: 386 KFNAAADKLAKRA 398
+ N A+++A+ +
Sbjct: 540 EGNTLAERVARES 552
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 109/410 (26%), Positives = 170/410 (41%), Gaps = 54/410 (13%)
Query: 53 WNEEVLSRIFDSQTQNLIKAIPI-DAEGEDVRKWTLNKSGRFTVNSMYRYLS--TSMNSP 109
W++ +S+ D I I + ++ D W N +G +TV S Y L+ S N P
Sbjct: 88 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 147
Query: 110 SLLNPNWKF-----IWKLPTIPRIQTFIWKICTKTLPVRKRI---GKFIDGNLNCPNC-V 160
++ P+ IW LP +P+++ F+W+ ++ L +R+ G ID +CP C
Sbjct: 148 AINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDP--SCPRCHR 205
Query: 161 EIESIEHALLHCPLAKNIW-----------FYFNIISENIIFVADWIFSWENTTPLNDRK 209
E ESI HAL CP A W N ENI + +++ ++TT + K
Sbjct: 206 ENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFV---QDTTMSDFHK 262
Query: 210 NQNLLAT-ILWIIWKIRCDHCFQHEINDLSHIIKMIQNFPKNDPMNV---NKNKPEETK- 264
LL ++W IWK R + F S + + +D +N +K P T+
Sbjct: 263 ---LLPVWLIWRIWKARNNVVFNKFRESPSKTV-LSAKAETHDWLNATQSHKKTPSPTRQ 318
Query: 265 -------WIPPKQGWLKINVDASFS-NVHEITGTSLIIHDSDSKFIEAHTSIARSRNSEE 316
W P ++K N DA F E TG +I + + +A + N E
Sbjct: 319 IAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLE 378
Query: 317 GEAIAILNGLVWAVEHNYKHIIIESDN---INIIQNIKNSKHVVHWQSCIHIQKINEIKR 373
E A+L L Y + +E D IN+I I H H++ I+
Sbjct: 379 AETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGIS-----FHSSLANHLEDISFWAN 433
Query: 374 KLDRVTFNFSCRKFNAAADKLAKRARKKHKSESWS-RIPYFISKLYCNDT 422
K + F F RK N A LAK S S +P ++ + +CND+
Sbjct: 434 KFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYSGSGSLPIWLDRYFCNDS 483
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 136/320 (42%), Gaps = 48/320 (15%)
Query: 117 KFIWKLPTIPRIQTFIWKICTKTLPVRKRI-GKFIDGNLNCPNC-VEIESIEHALLHCPL 174
+ IWKL P+I+ F+W+ T L R+ + ID + C C +E E+I H + +CP
Sbjct: 35 QAIWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPY 94
Query: 175 AKNIWFYFNIISENIIFVADWIFSWENTTPLNDRKNQNLLAT---------------ILW 219
+++W NII N W + D N+ + + I+W
Sbjct: 95 TQSVWRSANIIIGN---------QWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMW 145
Query: 220 IIWKIRCDHCFQHEINDLSH-IIKMIQNF---------PKNDPMNVNKN-----KPEETK 264
+WK R FQ + + K IQ+ +N ++V N + + ++
Sbjct: 146 RLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQ 205
Query: 265 WIPPKQGWLKINVDASFSNVHEITGTSLIIHDSDSKFIE-AHTSIARSRNSEEGEAIAIL 323
W PP +GW+K N D+ ++ T + I + + + + + S S EA+ L
Sbjct: 206 WNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFL 265
Query: 324 NGL--VWAVEHNYKHIIIESDNINIIQNIKNSKHVVHWQSCIHIQKINEIKRKLDRVTFN 381
+ L +WA H +++ ESD+ +++ I N + H I I KL +
Sbjct: 266 HALQVIWA--HGLRYVWFESDSKSLVTLINNGED--HSLLGTLIYDIRHWMLKLPYCSLE 321
Query: 382 FSCRKFNAAADKLAKRARKK 401
F R+ N+AAD LA +
Sbjct: 322 FVNRERNSAADALASHVHAR 341
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 75.1 bits (183), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 100/231 (43%), Gaps = 22/231 (9%)
Query: 207 DRKNQNLLATILWIIWKIRCDHCFQHEINDLSHIIKMIQNFPK--------NDPMNVNKN 258
DR + + ++W IWK D F H ++M N K N+ N N+N
Sbjct: 37 DRVTRFMPFWLMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRN 96
Query: 259 K--PEETKWIPPKQGWLKINVDASFSNVHEITGTSLIIHDSDSKFIEAHTSIARSR-NSE 315
TKW PP + LK N DAS + ++G I+ +S IE + R +E
Sbjct: 97 ADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTE 156
Query: 316 EGEAIAILNGLVWAVEHNY----KHIIIESDNINIIQNIKNSKHVVHWQSCIHIQKINEI 371
E E + L+WA++ +Y K +I E DN I + I Q + I
Sbjct: 157 EAEC----STLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQH--FLDTIQSW 210
Query: 372 KRKLDRVTFNFSCRKFNAAADKLAKRARKKHKSES-WSRIPYFISKLYCND 421
+ + F+F R+ N AD LAK+A K++ S + PYF+S ND
Sbjct: 211 IPSFESIEFSFKHREQNGCADFLAKQAIKENTQWSLFHSCPYFLSPYVNND 261
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 143/331 (43%), Gaps = 39/331 (11%)
Query: 119 IWKLPTIPRIQTFIWKICTKTLPVRKRIG-KFIDGNLNCPNCV-EIESIEHALLHCPLAK 176
IWKL T P+I+ F+WK+ + L + + I + C C E E+ +H C A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 177 NIWFYFNIISENIIFVA---DWIFSWENTTPLNDRKNQ--NLLATILWIIWKIRCDHCFQ 231
+W I + + + ++ L +R+ Q NL ILW +WK R FQ
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 232 HEINDLSHIIKMIQN----------FPKNDPMNVNKNKPEE-----TKWIPPKQGWLKIN 276
+ + ++ +N + ++ V+ ++ ++ TKW P W+K N
Sbjct: 138 QKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYN 197
Query: 277 VDASFSNVHEITGTSLIIHDSDSKFIEAHTSIAR-SRNSEEGEAIAILNGLVWAVEHNYK 335
D +F++ ++ D + ++ + +I + +S E E A++ + A Y+
Sbjct: 198 YDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGYR 257
Query: 336 HIIIESDNINIIQNIKNSKHVVHWQSCIHIQKINEIK------RKLDRVTFNFSCRKFNA 389
+I E D+ + + + N K ++ + N I+ ++ + F + R N
Sbjct: 258 KVIFEGDSKQVEELMNNEK--------LNFGRFNWIREGRFWQKRFEEAVFKWVPRTNNQ 309
Query: 390 AADKLAKRARKKHKSESWS-RIPYFI-SKLY 418
AD LAK + ++S + +P FI S LY
Sbjct: 310 PADILAKHHLQPNQSFKFHYYVPAFITSTLY 340