BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g0990.1
(912 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 141 9e-35
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 115 1e-26
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 115 1e-26
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 117 2e-26
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 91 1e-18
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 141 bits (355), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 137/553 (24%), Positives = 241/553 (43%), Gaps = 89/553 (16%)
Query: 417 TIPRYQMQCFALPKSTSKRIATSQKSLWW---GKSKGICTKAWSYICPPKKLGGLGIHHP 473
+P Y M CF LPK+ K+I + WW ++KG+ KAW ++ K GG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 474 HLDNQALLSKLARRLKTDSDAIWVKFLKAKYFHQSDH-PGPAKAYHSWIWKILRRHYDLI 532
N ALL K R+ + +++ K K++YFH+SD P + S++WK + +++
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 533 ENHITWEVHSGENINIWKDNWIPGE----------VQQLQNTNNSGLNKVSERI--CNNK 580
V +GE+I IW+ W+ + V + + S + KVS+ I +
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 581 WNENILSHTFPDNICNLIKAILIQQKGI-DKMKWKLTQSGNFTVKSMYQHLS------SA 633
W ++++ FP+ LI + + I D W T SG++TVKS Y L+ S+
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSS 241
Query: 634 DQSSSLGEIN--WSFIWTLPTIPRIQPFIWKICTKALPVRQRIEH-----------IPSL 680
Q S +N + IW T P+IQ F+WK + +LPV + + PS
Sbjct: 242 PQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSC 301
Query: 681 SEWI-----------MSWQ--------NQDQTNCTIDNIHFVT----------------- 704
E + ++W + + N+++V
Sbjct: 302 KETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVP 361
Query: 705 -ILWYIWKTRCDHCFQQSVYDVDTVIE---------LIKTFPKISVEKVNHDNVTKSNWQ 754
+LW +WK R + F+ ++ V+ I+T + K + + W+
Sbjct: 362 WLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWR 421
Query: 755 PPTQPFVKINLDASFANVAQIIGTSLFVHDYRS--KFISASVNIGRARNSEEGEALAILN 812
PP +VK N DA++ + G + + + K++ A + + ++ E E A+
Sbjct: 422 PPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA-LPKLKSVLEAELEAMRW 480
Query: 813 GITWAKENNYMQVIIESDNINLIKHLNNSKHQVQWQSL-VHIRQIRNVKKEMQQVKFNYI 871
+ Y VI ESD+ LI+ LNN + W SL I+ ++ + + +VKF +I
Sbjct: 481 AVLSLSRFQYNYVIFESDSQVLIEILNNDEI---WPSLKPTIQDLQRLLSQFTEVKFVFI 537
Query: 872 KRDKNTQADKLEK 884
R+ NT A+++ +
Sbjct: 538 PREGNTLAERVAR 550
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 123/267 (46%), Gaps = 7/267 (2%)
Query: 292 LTISHLLFADDCIIFGKNSIENVHNLKAILSSFCSASGQMINYNKSNIFYSKNSHPKFKR 351
+ I+HL FADD ++F ++ + I F SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 352 IIMKTLKVKYASTSEKYLGTQLFIGPQKTKVFNSILDQINNKLSKWNHAFLSQAGRTVVI 411
I+ + + +YLG L T + ++++I ++ KW LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 412 SAVAATIPRYQMQCFALPKSTSKRIATSQKSLWWGKSKGICTK---AWSYICPPKKLGGL 468
S+V ++ + M F LP + K I + S W + K AWS +C PK GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 469 GIHHPHLDNQALLSKLARRLKTDSDAIWVKFLKAKYFHQSDHPGPA--KAYHSWIWKILR 526
GI N+ L KL R+ + S ++WV++L+ + + SW+WK +
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 527 RHYDLIENHITWEVHSGENINIWKDNW 553
+H L + ++H+G N + W DNW
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 123/267 (46%), Gaps = 7/267 (2%)
Query: 292 LTISHLLFADDCIIFGKNSIENVHNLKAILSSFCSASGQMINYNKSNIFYSKNSHPKFKR 351
+ I+HL FADD ++F ++ + I F SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 352 IIMKTLKVKYASTSEKYLGTQLFIGPQKTKVFNSILDQINNKLSKWNHAFLSQAGRTVVI 411
I+ + + +YLG L T + ++++I ++ KW LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 412 SAVAATIPRYQMQCFALPKSTSKRIATSQKSLWWGKSKGICTK---AWSYICPPKKLGGL 468
S+V ++ + M F LP + K I + S W + K AWS +C PK GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 469 GIHHPHLDNQALLSKLARRLKTDSDAIWVKFLKAKYFHQSDHPGPA--KAYHSWIWKILR 526
GI N+ L KL R+ + S ++WV++L+ + + SW+WK +
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 527 RHYDLIENHITWEVHSGENINIWKDNW 553
+H L + ++H+G N + W DNW
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 122/267 (45%), Gaps = 7/267 (2%)
Query: 292 LTISHLLFADDCIIFGKNSIENVHNLKAILSSFCSASGQMINYNKSNIFYSKNSHPKFKR 351
+ I+HL FADD ++F ++ + I F SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 352 IIMKTLKVKYASTSEKYLGTQLFIGPQKTKVFNSILDQINNKLSKWNHAFLSQAGRTVVI 411
I+ + + +YLG L T + ++++I ++ KW LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 412 SAVAATIPRYQMQCFALPKSTSKRIATSQKSLWWGKSKGICTK---AWSYICPPKKLGGL 468
S+V ++ + M F LP + K I + S W + K AWS +C PK GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 469 GIHHPHLDNQALLSKLARRLKTDSDAIWVKFLKAKYFHQSD--HPGPAKAYHSWIWKILR 526
GI N+ L KL R+ + S ++WV++L+ + SW+WK +
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 527 RHYDLIENHITWEVHSGENINIWKDNW 553
+H L + ++H+G N + W DNW
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 6/192 (3%)
Query: 367 KYLGTQLFIGPQKTKVFNSILDQINNKLSKWNHAFLSQAGRTVVISAVAATIPRYQMQCF 426
+YLG L T + ++++I ++ KW LS AGR +IS+V ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 427 ALPKSTSKRIATSQKSLWWGKSKGICTK---AWSYICPPKKLGGLGIHHPHLDNQALLSK 483
LP + K I + S W + K AWS +C PK GGLGI N+ L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 484 LARRLKTDSDAIWVKFLKAKYFHQSDHPGPA--KAYHSWIWKILRRHYDLIENHITWEVH 541
L R+ S ++WV++L+ + + SW+WK + +H L + ++H
Sbjct: 146 LIWRM-LSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 204
Query: 542 SGENINIWKDNW 553
+G N + W DNW
Sbjct: 205 NGSNTSFWFDNW 216