BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g1030.1
(255 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46780.2 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 241 6e-79
AT2G46780.1 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 241 6e-79
AT1G33470.2 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 172 7e-53
AT1G33470.3 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 167 3e-51
AT1G33470.1 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 167 4e-51
>AT2G46780.2 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr2:19229516-19231043 FORWARD LENGTH=336 | 201606
Length = 336
Score = 241 bits (616), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 142/259 (54%), Positives = 164/259 (63%), Gaps = 39/259 (15%)
Query: 1 MSQQRQLGMVGGRNNGSQLIDTTYTKIFVGGLAWETKRDTMRHYFEQFGEIQEAVVITDK 60
M+QQRQ M GG NN DT TKIFVGGLAWET+RDTMR YFEQFGEI EAVVITDK
Sbjct: 1 MAQQRQFQMEGGNNN---TTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDK 57
Query: 61 NTGRSKGYGFVTFKDPDAAIRACQDPSPVIDGRRANCNLACLGANRSYPSSTPQPGNGRF 120
NTGRSKGYGFVTFK+ +AA+RACQ+ +PVIDGRRANCNLACLGA + P ++P+ G GRF
Sbjct: 58 NTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRF 117
Query: 121 KPTLGSI----PS-TYEGSSS--------YFHQQTPYTFPYSTYGYTGYSQENMYQMNYY 167
+ + PS + GSSS + FPYSTYG++GYSQE MY MNYY
Sbjct: 118 RSPGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYY 177
Query: 168 N--VYGGQQLSPYYTAASGAPGGVFPNYYPYYLQGNNGQ---------------GLRVQY 210
N +YGGQQ SPY S G+F +YPYY Q N Q G QY
Sbjct: 178 NHHLYGGQQFSPYMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFSFQY 237
Query: 211 -----PQWVQYPYL-SQPY 223
P +QYPYL QP+
Sbjct: 238 TAPPAPPLLQYPYLPHQPH 256
>AT2G46780.1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr2:19229516-19231043 FORWARD LENGTH=336 | 201606
Length = 336
Score = 241 bits (616), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 142/259 (54%), Positives = 164/259 (63%), Gaps = 39/259 (15%)
Query: 1 MSQQRQLGMVGGRNNGSQLIDTTYTKIFVGGLAWETKRDTMRHYFEQFGEIQEAVVITDK 60
M+QQRQ M GG NN DT TKIFVGGLAWET+RDTMR YFEQFGEI EAVVITDK
Sbjct: 1 MAQQRQFQMEGGNNN---TTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDK 57
Query: 61 NTGRSKGYGFVTFKDPDAAIRACQDPSPVIDGRRANCNLACLGANRSYPSSTPQPGNGRF 120
NTGRSKGYGFVTFK+ +AA+RACQ+ +PVIDGRRANCNLACLGA + P ++P+ G GRF
Sbjct: 58 NTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRF 117
Query: 121 KPTLGSI----PS-TYEGSSS--------YFHQQTPYTFPYSTYGYTGYSQENMYQMNYY 167
+ + PS + GSSS + FPYSTYG++GYSQE MY MNYY
Sbjct: 118 RSPGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYY 177
Query: 168 N--VYGGQQLSPYYTAASGAPGGVFPNYYPYYLQGNNGQ---------------GLRVQY 210
N +YGGQQ SPY S G+F +YPYY Q N Q G QY
Sbjct: 178 NHHLYGGQQFSPYMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFSFQY 237
Query: 211 -----PQWVQYPYL-SQPY 223
P +QYPYL QP+
Sbjct: 238 TAPPAPPLLQYPYLPHQPH 256
>AT1G33470.2 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr1:12144632-12146040 FORWARD LENGTH=244 | 201606
Length = 244
Score = 172 bits (435), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 127/202 (62%), Gaps = 23/202 (11%)
Query: 19 LIDTTYTKIFVGGLAWETKRDTMRHYFEQFGEIQEAVVITDKNTGRSKGYGFVTFKDPDA 78
+ DTT+TK+FVGGLAWET + ++R+YFEQFG+I EAVVITDK++GRSKGYGFVTF DP+A
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 79 AIRACQDPSPVIDGRRANCNLACLGANRSYPSSTPQPGN--GR-------FKPTLGSIPS 129
A +AC DP+PVIDGRRANCNLA G RS PSS P G+ GR FK G+ +
Sbjct: 61 AQKACVDPAPVIDGRRANCNLAAFGVQRSKPSS-PIHGHVGGRGMKVTSPFKTHFGTAAT 119
Query: 130 TYEGSSSYFHQQTPYTFPYSTYGYTGYSQENMYQMNYYNVYGGQQL-SPYY-----TAAS 183
+ H PYT P +G++ YS + Y +YYNVYGG P Y T +
Sbjct: 120 AIPSPLPFSHYTLPYTNP---FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVA 176
Query: 184 GAPGGVFPNYYPYYLQGNNGQG 205
AP F YP YLQ G G
Sbjct: 177 AAPAAGF---YP-YLQFAEGNG 194
>AT1G33470.3 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr1:12144632-12146040 FORWARD LENGTH=241 | 201606
Length = 241
Score = 167 bits (424), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 127/203 (62%), Gaps = 24/203 (11%)
Query: 19 LIDTTYTKIFVGGLAWETKRDTMRHYFEQFGEIQEAVVITDKNTGRSKGYGFVTFKDPDA 78
+ DTT+TK+FVGGLAWET + ++R+YFEQFG+I EAVVITDK++GRSKGYGFVTF DP+A
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 79 AIRACQDPSPVIDGRRANCNLACLGANRSYPSSTPQPGN--GR-------FKPTLGSIPS 129
A +AC DP+PVIDGRRANCNLA G RS PSS P G+ GR FK G+ +
Sbjct: 61 AQKACVDPAPVIDGRRANCNLAAFGVQRSKPSS-PIHGHVGGRGMKVTSPFKTHFGTAAT 119
Query: 130 TYEGSSSYFHQQTPYTFPYSTYGYTGYSQENMY-QMNYYNVYGGQQL-SPYY-----TAA 182
+ H PYT P +G++ YS + Y +YYNVYGG P Y T
Sbjct: 120 AIPSPLPFSHYTLPYTNP---FGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGV 176
Query: 183 SGAPGGVFPNYYPYYLQGNNGQG 205
+ AP F YP YLQ G G
Sbjct: 177 AAAPAAGF---YP-YLQFAEGNG 195
>AT1G33470.1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr1:12144632-12146040 FORWARD LENGTH=245 | 201606
Length = 245
Score = 167 bits (424), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 127/203 (62%), Gaps = 24/203 (11%)
Query: 19 LIDTTYTKIFVGGLAWETKRDTMRHYFEQFGEIQEAVVITDKNTGRSKGYGFVTFKDPDA 78
+ DTT+TK+FVGGLAWET + ++R+YFEQFG+I EAVVITDK++GRSKGYGFVTF DP+A
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 79 AIRACQDPSPVIDGRRANCNLACLGANRSYPSSTPQPGN--GR-------FKPTLGSIPS 129
A +AC DP+PVIDGRRANCNLA G RS PSS P G+ GR FK G+ +
Sbjct: 61 AQKACVDPAPVIDGRRANCNLAAFGVQRSKPSS-PIHGHVGGRGMKVTSPFKTHFGTAAT 119
Query: 130 TYEGSSSYFHQQTPYTFPYSTYGYTGYSQENMY-QMNYYNVYGGQQL-SPYY-----TAA 182
+ H PYT P +G++ YS + Y +YYNVYGG P Y T
Sbjct: 120 AIPSPLPFSHYTLPYTNP---FGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGV 176
Query: 183 SGAPGGVFPNYYPYYLQGNNGQG 205
+ AP F YP YLQ G G
Sbjct: 177 AAAPAAGF---YP-YLQFAEGNG 195