BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g1050.1
(1162 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32810.2 | RING/FYVE/PHD zinc finger superfamily protein | Ch... 317 3e-91
AT4G10600.2 | RING/FYVE/PHD zinc finger superfamily protein | Ch... 218 2e-64
AT4G10600.1 | RING/FYVE/PHD zinc finger superfamily protein | Ch... 218 2e-64
AT2G01810.1 | RING/FYVE/PHD zinc finger superfamily protein | Ch... 56 2e-07
AT1G33420.1 | RING/FYVE/PHD zinc finger superfamily protein | Ch... 56 2e-07
>AT1G32810.2 | RING/FYVE/PHD zinc finger superfamily protein |
Chr1:11881810-11885843 FORWARD LENGTH=1068 | 201606
Length = 1068
Score = 317 bits (813), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 163/292 (55%), Positives = 194/292 (66%), Gaps = 25/292 (8%)
Query: 1 MKGRSHRLASTEPPDDWVNGSWTVDCVCGVNFDDGKEMVNCDECGVWVHTRCSRFVKGQA 60
MKGRS+R +ST+P +DWV+G WTVDCVCGVN DDG EMV CD+CGVWVHTRCSRFV+GQ
Sbjct: 1 MKGRSYRFSSTDPHEDWVDGLWTVDCVCGVNDDDGTEMVKCDDCGVWVHTRCSRFVEGQE 60
Query: 61 SFSCDKCKSKKNKNDNEETEVAQFLVELTSKTLRMDNLSAPSVPPRPAFRLWTEIPIEER 120
F+C KCKSK N ND+EETEVAQ LVEL +KTL M+N SVP + FRLWTEIP EE+
Sbjct: 61 LFTCHKCKSKNNVNDSEETEVAQLLVELPTKTLGMENSCTRSVPFKRPFRLWTEIPAEEK 120
Query: 121 VHVQGVPGGDPSLFQGLSSVFTSELWKCRGNIPKKFNFQYREFPCWDEKEEMVDARIEEE 180
VHVQG+PGGDPSLF GLSSVF+ ELWKC G +PKKFN +YREFPCWDE+E+
Sbjct: 121 VHVQGIPGGDPSLFDGLSSVFSRELWKCSGYVPKKFNLKYREFPCWDEQEK--------- 171
Query: 181 MDTPADRGGADVLFSLSKEIVLTKPAEGDTSLRVSTDEADCGRKIYSKEVK---KSGGND 237
D GA VLFS+SKE V+ P +R S D K + +VK SG D
Sbjct: 172 -----DEDGAGVLFSMSKENVIAAPVSTLVGMRRSLDG-----KGGTNDVKLGCDSGETD 221
Query: 238 KSISLEADAKQEKTYPYTPFVNTGKQKEELLRSKER-SKRARSTDKETDSKK 288
+ S A K ++ P + ++KE SKER K+ DKE D KK
Sbjct: 222 RKHSQGAIKKDKRL--LRPMMTNKRRKELFGASKERMKKKVEVVDKEEDDKK 271
Score = 218 bits (556), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 187/396 (47%), Positives = 238/396 (60%), Gaps = 48/396 (12%)
Query: 757 SSHVQNKTSL-GYFQKGERVTESNSQPSSKVNHSPSMHPPAPVNSSATLSDEELALLLHQ 815
SS +K SL G F K E+ +S Q S+K N S+ AP LSDEELAL LH
Sbjct: 673 SSEAPSKHSLSGTFPKNEKPGQSIFQSSTK-NPVQSIISLAP-----NLSDEELALRLHH 726
Query: 816 ELNSSPRVPRVPRVRHVGSVSQLGSPTATSTLIKRTSS-GAKDQIMFSRRKRDDATRGGS 874
+LNSSPRVPRVPR+R GS+ SPTA S KRTSS G+KD FSRRK D ++ G
Sbjct: 727 QLNSSPRVPRVPRMRQPGSLPL--SPTAPS--FKRTSSSGSKDHTTFSRRKNKDTSKEGY 782
Query: 875 RNPSEPTEEMKRRERSTSCSDHGRRDP------------VSVNGSGKEESCNGSADSIPA 922
N ++ +R ++ S RR P S+ G+E ++
Sbjct: 783 CN-------LRDDDRCSTRSAKNRRSPDRRTQQDSGSRGGSLCSKGEENETTKTSSYSSR 835
Query: 923 KKNGLSPSTHNAIEGPPSSAEASDQNLSSNRSSSKDISDDDTGAVLRLPRTLPGLLDEIM 982
K ST + GP SS+E ++ N S SS ++ G + RTLPGL++EIM
Sbjct: 836 KVLLPPNSTTSTSSGPCSSSELNEHNKPSPHSSPRN-----NGTPVH--RTLPGLINEIM 888
Query: 983 SKGKRMSYEELCNAVLPHWPKLRKHNGERYAYTSHSQAVLDCLRNRNEWAQLVDRGPKTN 1042
+KGKRM+YEELCNAVLPHWP LRKHNGERYAY+SHSQAVLDCLRNR+EWA+LVDRGPKTN
Sbjct: 889 NKGKRMAYEELCNAVLPHWPHLRKHNGERYAYSSHSQAVLDCLRNRHEWARLVDRGPKTN 948
Query: 1043 A-RKRRKSDSESPIVEGISTEYEKSNTLQEVEVKYVESQREDFPKGKRKARKRRRLVLQG 1101
+ +K+RK D+ E S E E S ++ + SQ E+FPKGKRKARKRRRL +Q
Sbjct: 949 SGKKKRKLDA----AEEDSDENESSKGGRK-RLHQHHSQGEEFPKGKRKARKRRRLSIQR 1003
Query: 1102 RDIKDVR-KRQKADALTDSELGSFSHSSEGGTENIF 1136
+ IK +R KR + + + E +FS +SE E+IF
Sbjct: 1004 KGIKVLRKKRNEEEVSEEDEEDAFSDTSE---ESIF 1036
>AT4G10600.2 | RING/FYVE/PHD zinc finger superfamily protein |
Chr4:6547934-6548647 REVERSE LENGTH=237 | 201606
Length = 237
Score = 218 bits (556), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 110/187 (58%), Positives = 130/187 (69%), Gaps = 14/187 (7%)
Query: 13 PPDDWVNGSWTVDCVCGVNFDDGKEMVNCDECGVWVHTRCSRFVKGQASFSCDKCKSKKN 72
P +DWV SWTVDCVCGVNFDDGKEMV+CDECGVWVHT CSR+VKG F C KCK K N
Sbjct: 3 PHEDWVYESWTVDCVCGVNFDDGKEMVDCDECGVWVHTWCSRYVKGDDLFVCHKCKIKNN 62
Query: 73 KNDNEETEVAQFLVELTSKTLRMDNLSAPSVPPRPAFRLWTEIPIEERVHVQGVPGGDPS 132
E E+++ V +K+LRM+NL S + +EIPIEERVHVQGVPGGD
Sbjct: 63 -----EDELSKLSV---TKSLRMENLCTQS-SESVVLKACSEIPIEERVHVQGVPGGDLG 113
Query: 133 LFQGLSSVFTSELWKCRGNIPKKFNFQYREFPCWDEKEEMVDARIEEEMDTPADRGGADV 192
LF+ +SSVF+ +LWKC G +PKKF FQ REFPCWDEKE + D +E+ D A V
Sbjct: 114 LFECVSSVFSRQLWKCSGYVPKKFRFQCREFPCWDEKENVCDVVGDED-----DSNLAGV 168
Query: 193 LFSLSKE 199
L S+SKE
Sbjct: 169 LLSMSKE 175
>AT4G10600.1 | RING/FYVE/PHD zinc finger superfamily protein |
Chr4:6547934-6548647 REVERSE LENGTH=237 | 201606
Length = 237
Score = 218 bits (556), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 110/187 (58%), Positives = 130/187 (69%), Gaps = 14/187 (7%)
Query: 13 PPDDWVNGSWTVDCVCGVNFDDGKEMVNCDECGVWVHTRCSRFVKGQASFSCDKCKSKKN 72
P +DWV SWTVDCVCGVNFDDGKEMV+CDECGVWVHT CSR+VKG F C KCK K N
Sbjct: 3 PHEDWVYESWTVDCVCGVNFDDGKEMVDCDECGVWVHTWCSRYVKGDDLFVCHKCKIKNN 62
Query: 73 KNDNEETEVAQFLVELTSKTLRMDNLSAPSVPPRPAFRLWTEIPIEERVHVQGVPGGDPS 132
E E+++ V +K+LRM+NL S + +EIPIEERVHVQGVPGGD
Sbjct: 63 -----EDELSKLSV---TKSLRMENLCTQS-SESVVLKACSEIPIEERVHVQGVPGGDLG 113
Query: 133 LFQGLSSVFTSELWKCRGNIPKKFNFQYREFPCWDEKEEMVDARIEEEMDTPADRGGADV 192
LF+ +SSVF+ +LWKC G +PKKF FQ REFPCWDEKE + D +E+ D A V
Sbjct: 114 LFECVSSVFSRQLWKCSGYVPKKFRFQCREFPCWDEKENVCDVVGDED-----DSNLAGV 168
Query: 193 LFSLSKE 199
L S+SKE
Sbjct: 169 LLSMSKE 175
>AT2G01810.1 | RING/FYVE/PHD zinc finger superfamily protein |
Chr2:347537-349952 FORWARD LENGTH=697 | 201606
Length = 697
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 22 WTVDCVCGVNFDDGKEMVNCDECGVWVHTRCSRFVKGQA---SFSCDKC 67
WTVDC CG DDG+ MV CD C VW HT C+ +A F C+ C
Sbjct: 634 WTVDCKCGARDDDGERMVACDACKVWHHTLCNSIEDDEAVPSVFLCNMC 682
>AT1G33420.1 | RING/FYVE/PHD zinc finger superfamily protein |
Chr1:12121063-12123346 REVERSE LENGTH=697 | 201606
Length = 697
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 22 WTVDCVCGVNFDDGKEMVNCDECGVWVHTRCSRFVKGQA---SFSCDKC---KSKKNKND 75
W VDC CG DDG+ M+ CD CGVW HTRC A F C +C SKK K
Sbjct: 602 WKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELYSKKPKQS 661
Query: 76 NEE 78
+E
Sbjct: 662 KKE 664