BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g1080.1
(186 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 61 3e-11
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 55 3e-09
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 54 2e-08
AT1G52990.2 | thioredoxin family protein | Chr1:19741201-1974344... 50 3e-07
AT1G52990.1 | thioredoxin family protein | Chr1:19740503-1974344... 50 3e-07
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 60.8 bits (146), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 10 STFASNPQNINRKIDIT--ILWLPLKPPYIKINVDASFLTEQELVGIGCIMHDDKANFIA 67
+T + QN NR D + W P +K N DAS + G+G I+ + + I
Sbjct: 84 NTMTNEQQNGNRNADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIE 143
Query: 68 -AMACNVRRQNAEEGECCAIIKALQWAMKKNILYLHIESDNRNMVQLLNNETSDISWQTS 126
M R EE EC +I A+Q + + E DN+ + +++N ++S+ Q
Sbjct: 144 CGMGKFQGRMTTEEAECSTLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQ-- 201
Query: 127 KIIDTVHQLEANFFKVLYTHIHREGNHKADQLAK--------WSRMHA 166
+DT+ +F + ++ HRE N AD LAK WS H+
Sbjct: 202 HFLDTIQSWIPSFESIEFSFKHREQNGCADFLAKQAIKENTQWSLFHS 249
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 55.5 bits (132), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 20/156 (12%)
Query: 13 ASNPQNINRKIDITILWLPLKPPY--IKINVDASFLTEQELVGIGCIMHDDKANFIAAMA 70
AS PQ + R ++++ W PPY +K N DA++ E GIG I+ ++ + A
Sbjct: 124 ASGPQ-VER--NLSVQWK--APPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGA 178
Query: 71 CNV-RRQNAEEGECCAIIKALQWAM----KKNILYLHIESDNRNMVQLLNNETSDISWQT 125
+ R +N E E ++AL+WA+ + N + ESD + +V LLN SD W T
Sbjct: 179 RALPRTKNVLEAE----LEALRWAVLTMSRFNYKRIIFESDAQALVNLLN---SDDFWPT 231
Query: 126 -SKIIDTVHQLEANFFKVLYTHIHREGNHKADQLAK 160
++ + QL +F +V + R GN AD++A+
Sbjct: 232 LQPALEDIQQLLHHFEEVKFEFTPRGGNKVADRIAR 267
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 15/139 (10%)
Query: 29 WLPLKPPYIKINVDASFLTEQELVGIGCIMHDDKA--NFIAAMACNVRRQNAEEGECCAI 86
W P ++K N DA++ + E GIG ++ ++K ++ A A + E A
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLE-----AE 474
Query: 87 IKALQWAM----KKNILYLHIESDNRNMVQLLNNETSDISWQTSK-IIDTVHQLEANFFK 141
++A++WA+ + Y+ ESD++ ++++LNN D W + K I + +L + F +
Sbjct: 475 LEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNN---DEIWPSLKPTIQDLQRLLSQFTE 531
Query: 142 VLYTHIHREGNHKADQLAK 160
V + I REGN A+++A+
Sbjct: 532 VKFVFIPREGNTLAERVAR 550
>AT1G52990.2 | thioredoxin family protein | Chr1:19741201-19743449
REVERSE LENGTH=243 | 201606
Length = 243
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 37 IKINVDASFLTEQELVGIGCIMHDDKANFI-AAMACNVRRQNAEEGECCAIIKALQWAMK 95
+K N DAS + G+G ++ + + + M R EE EC A+I A+Q
Sbjct: 48 VKCNYDASHHEGDVVSGLGWLIRNSQGTVLECGMGKFQGRMTPEEAECSALIWAIQATSA 107
Query: 96 KNILYLHIESDNRNMVQLLNNETSDISWQTSKIIDTVHQLEANFFKVLYTHIHREGNHKA 155
+ E DN N+ +L+N ++ + + +DT+ +F + HRE N A
Sbjct: 108 FGYTKVIFEGDNSNVNRLINTKSDNP--RLKHYLDTIKSWIPSFTSTEFIFTHREQNQCA 165
Query: 156 DQLAKWSRMHAGSW 169
D L K + + W
Sbjct: 166 DTLVKKAIKSSTQW 179
>AT1G52990.1 | thioredoxin family protein | Chr1:19740503-19743449
REVERSE LENGTH=313 | 201606
Length = 313
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 37 IKINVDASFLTEQELVGIGCIMHDDKANFI-AAMACNVRRQNAEEGECCAIIKALQWAMK 95
+K N DAS + G+G ++ + + + M R EE EC A+I A+Q
Sbjct: 48 VKCNYDASHHEGDVVSGLGWLIRNSQGTVLECGMGKFQGRMTPEEAECSALIWAIQATSA 107
Query: 96 KNILYLHIESDNRNMVQLLNNETSDISWQTSKIIDTVHQLEANFFKVLYTHIHREGNHKA 155
+ E DN N+ +L+N ++ + + +DT+ +F + HRE N A
Sbjct: 108 FGYTKVIFEGDNSNVNRLINTKSDNP--RLKHYLDTIKSWIPSFTSTEFIFTHREQNQCA 165
Query: 156 DQLAKWSRMHAGSW 169
D L K + + W
Sbjct: 166 DTLVKKAIKSSTQW 179