BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g1110.1
(255 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 50 5e-07
AT2G33160.1 | glycoside hydrolase family 28 protein / polygalact... 51 6e-07
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 48 2e-06
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 49 2e-06
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 45 2e-05
>AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:9706657-9707298 REVERSE
LENGTH=213 | 201606
Length = 213
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 146 ANKLSQSNEKTKK------KQKWRPPSTPYLKFNVDASFTKVEEPAGIGCIIRDEDSNFI 199
AN ++Q N +++ +WR P ++K N D SF + + G ++RD + +++
Sbjct: 30 ANTVAQINTRSRGVREEDNHDRWRRPERGWIKCNFDGSFVNGDVKSKAGWVVRDSNGSYL 89
Query: 200 IAA-AYTVRSQHAEECEGLAILTSMQWAIQLNISHAHIESDNQAIINHLNG 249
+A A + +A E E A++ SMQ E DN+ + + +NG
Sbjct: 90 LAGQAIGRKVDNALESEIQALIISMQHCWSHGYKRVCFEGDNKMLFDLING 140
>AT2G33160.1 | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
Chr2:14053404-14056246 FORWARD LENGTH=664 | 201606
Length = 664
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 162 WRPPSTPYLKFNVDASFTKVEEPAGIGCIIRDEDSNFIIAA-AYTVRSQHAEECEGLAIL 220
WR P+ ++K NVD SF P G I+RD + + A A +A ECE A+L
Sbjct: 503 WRRPTNGWVKCNVDGSFINGNIPGKGGWIVRDHNGRYEFAGQAIGNCIDNALECEFQALL 562
Query: 221 TSMQWAIQLNISHAHIESDNQAIINHLNG 249
+MQ E DN+ + + +NG
Sbjct: 563 MAMQHCWSKGYRRICFEGDNKEMFDLING 591
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 82 GSEANMISLRLVRALNLDVLDHPEPYKVSNTV---------NLNRLIITAYLQSVKAVIK 132
G + + L LNL+V + P+ K+ N V + N L+ V++
Sbjct: 47 GEWTDSLYANLYWVLNLEV-EIPKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLR 105
Query: 133 D--NGITSKKTKSQRANKLSQSNEKTKKKQKWRPPSTPYLKFNVDASFTKVEEP-AGIGC 189
T+ + K S + +W+ P ++K N DA++ ++E P GIG
Sbjct: 106 RAMEDFEEWSTRRELEGKASGPQVERNLSVQWKAPPYQWVKCNTDATW-QLENPRCGIGW 164
Query: 190 IIRDEDSNFIIAAAYTV-RSQHAEECEGLAILTSMQWAI----QLNISHAHIESDNQAII 244
I+R+E + A + R+++ E E L +++WA+ + N ESD QA++
Sbjct: 165 ILRNESGGVLWMGARALPRTKNVLEAE----LEALRWAVLTMSRFNYKRIIFESDAQALV 220
Query: 245 NHLN 248
N LN
Sbjct: 221 NLLN 224
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 161 KWRPPSTPYLKFNVDASFTKVEEPAGIGCIIRDEDSNFIIAAAYTV-RSQHAEECEGLAI 219
+WRPP ++K N DA++ + E GIG ++R+E A + + + E E
Sbjct: 419 RWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE---- 474
Query: 220 LTSMQWAI----QLNISHAHIESDNQAIINHLN 248
L +M+WA+ + ++ ESD+Q +I LN
Sbjct: 475 LEAMRWAVLSLSRFQYNYVIFESDSQVLIEILN 507
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 133 DNGITSKKTKSQRANKLSQSNEKTKKKQKWRPPSTPYLKFNVDASFTKVEEPAGIGCIIR 192
DN +T+++ R N + KW PP LK N DAS + +G+G I+R
Sbjct: 83 DNTMTNEQQNGNR-------NADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILR 135
Query: 193 DEDSNFIIAAAYTVRSQHAEECEGLAILTSMQWAIQLNISHAH----IESDNQAIINHLN 248
+ I + + E A +++ WAIQ + H E DNQ I +N
Sbjct: 136 NSQGTVIECGMGKFQGRMTTE---EAECSTLIWAIQASYGFGHKKVIFEGDNQTITRMIN 192