BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000102.1_g1160.1
         (294 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...   109   2e-28
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947...    53   1e-07

>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
           Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score =  109 bits (273), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 14/231 (6%)

Query: 5   TESGSDYNPTTPPHSSAIY--DIHHSDSPTTILITPLLSG-DNYASWSRGMKMALRAKDK 61
            E+    +PT+ P S      DIHH   P+   I  L    DNY +W    +  LR   K
Sbjct: 2   AETIKSVSPTSDPDSPYYLPPDIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKK 58

Query: 62  FGFVDGSISKPTTPVDLH-AWERCNDLVSSWLVNSISPDLRQSILYDESAAEIWTNLYDR 120
           FGF+DG++ KP     L+  WE+CN +V  WL+NS++  L +S++Y E+A ++W +L   
Sbjct: 59  FGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRV 118

Query: 121 FHQTNAPKFFQLKRAISSMKQDRLDVSTYFTNLKSHQDELQTLLAIEPCQCGH-----GK 175
           F      K +QL+R +++++Q    V  YF  L     EL     I  C+CG       K
Sbjct: 119 FVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTK 178

Query: 176 ALIDRSNQDRAMEFLQG--LHDCFAPIRSQILLMDHFPSVLKIHSMVKHEE 224
              +   +++  EFL G  L+  F  + ++I+     PS+ +  +MVK  E
Sbjct: 179 RAEEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229


>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
           Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
          Length = 369

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 20/194 (10%)

Query: 34  ILITPLLSGDNYASWSRGMKMALRAKDKFGFVDGSISKPTTPVDLHAWERCNDLVSSWLV 93
           I +T  L+  NY  W    +    +    G +DGS S PT P+    W+  + LV  W+ 
Sbjct: 22  IFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGS-STPT-PMTEKRWKERDGLVKMWIY 79

Query: 94  NSISPDLRQSIL-YDESAAEIWTNLYDRFHQTNAPKFFQLKRAISSMKQDRLDVSTYFTN 152
            +I+  L  +I+    +A ++W +L + F      +  Q +  + +   D L V  Y   
Sbjct: 80  GTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQK 139

Query: 153 LKSHQDELQTLLAIEPCQCGHGKALIDRSNQDR--AMEFLQGLHDCFAPIRSQILLMDHF 210
           LKS  D L                 +D    DR   M  L GL + +  I + I     F
Sbjct: 140 LKSLSDLLTN---------------VDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPF 184

Query: 211 PSVLKIHSMVKHEE 224
           PS  +  SM+  EE
Sbjct: 185 PSFTEARSMLLMEE 198

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