BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000102.1_g1170.1
(856 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 546 e-180
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 546 e-180
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 211 2e-62
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 101 3e-25
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 99 1e-23
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 546 bits (1408), Expect = e-180, Method: Compositional matrix adjust.
Identities = 270/560 (48%), Positives = 373/560 (66%), Gaps = 14/560 (2%)
Query: 274 SSSVSMGAPPPNQCPTRDRC-PPPHLADYDCSNISLPYSNSRSNTPYPLTDYLSVAPFSK 332
S+++ P P+ + R P +L DY C +++ S T + ++ +LS S
Sbjct: 19 SANIQNDVPEPSVHTSHRRTRKPAYLQDYYCHSVA-------SLTIHDISQFLSYEKVSP 71
Query: 333 DHRIFLTSVLSHEEPTSFKKAMTSPHWREAMSTEIKALESNNTWTLTHLPAGKKPIGCKW 392
+ FL + +EP+++ +A W AM EI A+E+ +TW + LP KKPIGCKW
Sbjct: 72 LYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKW 131
Query: 393 VYKIKSNANGSIERYKARLVAKGYTQVEGLDYTDTFAPVAKLVTVRVLLSIAAVKGWSLH 452
VYKIK N++G+IERYKARLVAKGYTQ EG+D+ +TF+PV KL +V+++L+I+A+ ++LH
Sbjct: 132 VYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLH 191
Query: 453 QLDVNNAFLQGDLDEEVFMKLPPGFSPQEE-----TRVCRLKKSLYGLKQASRQWFSKFS 507
QLD++NAFL GDLDEE++MKLPPG++ ++ VC LKKS+YGLKQASRQWF KFS
Sbjct: 192 QLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFS 251
Query: 508 SVLLKRGFVQSLSDYSLFTYRKGSTSIYVLVYVDDIIITGNNNSAISSLKSFLSSAFSLK 567
L+ GFVQS SD++ F + + VLVYVDDIII NN++A+ LKS L S F L+
Sbjct: 252 VTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLR 311
Query: 568 DLGRLQYFLGIEVSRSSKGIFLCQSKYIVDILKDSGLTASKISPFPMDQKSKLSTTDGQP 627
DLG L+YFLG+E++RS+ GI +CQ KY +D+L ++GL K S PMD S G
Sbjct: 312 DLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGD 371
Query: 628 LEDPTVYRRLIGRLIYLTVTRPDITFAVNNLSQFMQDPRSSHMDAAHRVLRYLKGSIGKG 687
D YRRLIGRL+YL +TR DI+FAVN LSQF + PR +H A ++L Y+KG++G+G
Sbjct: 372 FVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQG 431
Query: 688 ILLSSSSRLLVSGFCDSDWSSCPTTRQSTTGYITMLGSSPLSWKSKKQHIIARSSAEAEY 747
+ SS + + + F D+ + SC TR+ST GY LG+S +SWKSKKQ ++++SSAEAEY
Sbjct: 432 LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 491
Query: 748 RAMATLTCELQWLKSLLSDLGIDHSSPMPVHSDNRAAIHIAENPVFHERTKHIEIDCHLV 807
RA++ T E+ WL +L + S P + DN AAIHIA N VFHERTKHIE DCH V
Sbjct: 492 RALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSV 551
Query: 808 REK-IKNNLIAPTFTPSSEQ 826
RE+ + ++ +F EQ
Sbjct: 552 RERSVYQATLSYSFQAYDEQ 571
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 546 bits (1408), Expect = e-180, Method: Compositional matrix adjust.
Identities = 270/560 (48%), Positives = 373/560 (66%), Gaps = 14/560 (2%)
Query: 274 SSSVSMGAPPPNQCPTRDRC-PPPHLADYDCSNISLPYSNSRSNTPYPLTDYLSVAPFSK 332
S+++ P P+ + R P +L DY C +++ S T + ++ +LS S
Sbjct: 19 SANIQNDVPEPSVHTSHRRTRKPAYLQDYYCHSVA-------SLTIHDISQFLSYEKVSP 71
Query: 333 DHRIFLTSVLSHEEPTSFKKAMTSPHWREAMSTEIKALESNNTWTLTHLPAGKKPIGCKW 392
+ FL + +EP+++ +A W AM EI A+E+ +TW + LP KKPIGCKW
Sbjct: 72 LYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKW 131
Query: 393 VYKIKSNANGSIERYKARLVAKGYTQVEGLDYTDTFAPVAKLVTVRVLLSIAAVKGWSLH 452
VYKIK N++G+IERYKARLVAKGYTQ EG+D+ +TF+PV KL +V+++L+I+A+ ++LH
Sbjct: 132 VYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLH 191
Query: 453 QLDVNNAFLQGDLDEEVFMKLPPGFSPQEE-----TRVCRLKKSLYGLKQASRQWFSKFS 507
QLD++NAFL GDLDEE++MKLPPG++ ++ VC LKKS+YGLKQASRQWF KFS
Sbjct: 192 QLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFS 251
Query: 508 SVLLKRGFVQSLSDYSLFTYRKGSTSIYVLVYVDDIIITGNNNSAISSLKSFLSSAFSLK 567
L+ GFVQS SD++ F + + VLVYVDDIII NN++A+ LKS L S F L+
Sbjct: 252 VTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLR 311
Query: 568 DLGRLQYFLGIEVSRSSKGIFLCQSKYIVDILKDSGLTASKISPFPMDQKSKLSTTDGQP 627
DLG L+YFLG+E++RS+ GI +CQ KY +D+L ++GL K S PMD S G
Sbjct: 312 DLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGD 371
Query: 628 LEDPTVYRRLIGRLIYLTVTRPDITFAVNNLSQFMQDPRSSHMDAAHRVLRYLKGSIGKG 687
D YRRLIGRL+YL +TR DI+FAVN LSQF + PR +H A ++L Y+KG++G+G
Sbjct: 372 FVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQG 431
Query: 688 ILLSSSSRLLVSGFCDSDWSSCPTTRQSTTGYITMLGSSPLSWKSKKQHIIARSSAEAEY 747
+ SS + + + F D+ + SC TR+ST GY LG+S +SWKSKKQ ++++SSAEAEY
Sbjct: 432 LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 491
Query: 748 RAMATLTCELQWLKSLLSDLGIDHSSPMPVHSDNRAAIHIAENPVFHERTKHIEIDCHLV 807
RA++ T E+ WL +L + S P + DN AAIHIA N VFHERTKHIE DCH V
Sbjct: 492 RALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSV 551
Query: 808 REK-IKNNLIAPTFTPSSEQ 826
RE+ + ++ +F EQ
Sbjct: 552 RERSVYQATLSYSFQAYDEQ 571
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 211 bits (537), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 153/228 (67%), Gaps = 5/228 (2%)
Query: 534 IYVLVYVDDIIITGNNNSAISSLKSFLSSAFSLKDLGRLQYFLGIEVSRSSKGIFLCQSK 593
+Y+L+YVDDI++TG++N+ ++ L LSS FS+KDLG + YFLGI++ G+FL Q+K
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 594 YIVDILKDSGLTASK--ISPFPMDQKSKLSTTDGQPLEDPTVYRRLIGRLIYLTVTRPDI 651
Y IL ++G+ K +P P+ S +ST DP+ +R ++G L YLT+TRPDI
Sbjct: 61 YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAK---YPDPSDFRSIVGALQYLTLTRPDI 117
Query: 652 TFAVNNLSQFMQDPRSSHMDAAHRVLRYLKGSIGKGILLSSSSRLLVSGFCDSDWSSCPT 711
++AVN + Q M +P + D RVLRY+KG+I G+ + +S+L V FCDSDW+ C +
Sbjct: 118 SYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 177
Query: 712 TRQSTTGYITMLGSSPLSWKSKKQHIIARSSAEAEYRAMATLTCELQW 759
TR+STTG+ T LG + +SW +K+Q ++RSS E EYRA+A EL W
Sbjct: 178 TRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 101 bits (252), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 63/82 (76%)
Query: 642 IYLTVTRPDITFAVNNLSQFMQDPRSSHMDAAHRVLRYLKGSIGKGILLSSSSRLLVSGF 701
+YLT+TRPD+TFAVN LSQF R++ M A ++VL Y+KG++G+G+ S++S L + F
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 702 CDSDWSSCPTTRQSTTGYITML 723
DSDW+SCP TR+S TG+ +++
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 99.4 bits (246), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 67/100 (67%)
Query: 345 EEPTSFKKAMTSPHWREAMSTEIKALESNNTWTLTHLPAGKKPIGCKWVYKIKSNANGSI 404
+EP S A+ P W +AM E+ AL N TW L P + +GCKWV+K K +++G++
Sbjct: 26 KEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTL 85
Query: 405 ERYKARLVAKGYTQVEGLDYTDTFAPVAKLVTVRVLLSIA 444
+R KARLVAKG+ Q EG+ + +T++PV + T+R +L++A
Sbjct: 86 DRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125