BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0020.1
(301 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 45 6e-05
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 45 8e-05
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 8 SWCWRKVLEGRELARAMVTHLIGNGCHTLFWKDIWHPEGLLWD 50
SW W+K+L+ R LA V H I NG +T FW D W G L D
Sbjct: 154 SWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLID 196
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 8 SWCWRKVLEGRELARAMVTHLIGNGCHTLFWKDIWHPEGLLWD 50
SW W+K+L+ R LA V H I NG +T FW D W G L D
Sbjct: 236 SWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLID 278