BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0030.1
(306 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 168 8e-48
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 168 8e-48
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 169 3e-47
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 131 6e-34
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 129 7e-34
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 168 bits (425), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 117/181 (64%), Gaps = 1/181 (0%)
Query: 123 VTHLCFADDLMVFMRGDESSVVTLRSVLDRFYMGTGLAANTMKSTVFWAGGED-DGFLVR 181
+THLCFADDL+VF G +SS+ + + +F +GL + KST++ AG +D D +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 182 SILGFEKGELPIKYLGLPLISSRLSYSDCVPLINKIRARIQSWKARYLSFAGRVLLIKVV 241
F G LP++YLGLPL++ +++ SD PL+ KIR RI W AR+LSFAGR+ LI V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 242 LNSMIIYWTSVFMFPKRVYKEINSLFSRFLWTGLQLEARKVSIRWAIVCLPVEEGGLGIR 301
++S+ +W S F P KEI+S+ S FLW+G +L +K + W+ VC P +EGGLGIR
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 302 E 302
Sbjct: 188 S 188
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 168 bits (425), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 117/181 (64%), Gaps = 1/181 (0%)
Query: 123 VTHLCFADDLMVFMRGDESSVVTLRSVLDRFYMGTGLAANTMKSTVFWAGGED-DGFLVR 181
+THLCFADDL+VF G +SS+ + + +F +GL + KST++ AG +D D +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 182 SILGFEKGELPIKYLGLPLISSRLSYSDCVPLINKIRARIQSWKARYLSFAGRVLLIKVV 241
F G LP++YLGLPL++ +++ SD PL+ KIR RI W AR+LSFAGR+ LI V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 242 LNSMIIYWTSVFMFPKRVYKEINSLFSRFLWTGLQLEARKVSIRWAIVCLPVEEGGLGIR 301
++S+ +W S F P KEI+S+ S FLW+G +L +K + W+ VC P +EGGLGIR
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 302 E 302
Sbjct: 188 S 188
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 169 bits (429), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 117/180 (65%), Gaps = 1/180 (0%)
Query: 123 VTHLCFADDLMVFMRGDESSVVTLRSVLDRFYMGTGLAANTMKSTVFWAGGED-DGFLVR 181
+THLCFADDL+VF G +SS+ + + +F +GL + KST++ AG +D D +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 182 SILGFEKGELPIKYLGLPLISSRLSYSDCVPLINKIRARIQSWKARYLSFAGRVLLIKVV 241
F G LP++YLGLPL++ +++ SD PL+ KIR RI W AR+LSFAGR+ LI V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 242 LNSMIIYWTSVFMFPKRVYKEINSLFSRFLWTGLQLEARKVSIRWAIVCLPVEEGGLGIR 301
++S+ +W S F P KEI+S+ S FLW+G +L +K + W+ VC P +EGGLGIR
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 131 bits (330), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 80/116 (68%)
Query: 186 FEKGELPIKYLGLPLISSRLSYSDCVPLINKIRARIQSWKARYLSFAGRVLLIKVVLNSM 245
F G LP++YLGLPL++ +++ SD PL+ KIR RI W AR+LSFAGR+ LI V++S+
Sbjct: 18 FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSL 77
Query: 246 IIYWTSVFMFPKRVYKEINSLFSRFLWTGLQLEARKVSIRWAIVCLPVEEGGLGIR 301
+W S F P KEI+S+ S FLW+G +L +K + W+ VC P +EGGLGIR
Sbjct: 78 TNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 133
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 129 bits (324), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 80/116 (68%)
Query: 186 FEKGELPIKYLGLPLISSRLSYSDCVPLINKIRARIQSWKARYLSFAGRVLLIKVVLNSM 245
F G LP++YLGLPL++ +++ SD PL+ KIR RI W AR+LSFAGR+ LI V++S+
Sbjct: 18 FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSL 77
Query: 246 IIYWTSVFMFPKRVYKEINSLFSRFLWTGLQLEARKVSIRWAIVCLPVEEGGLGIR 301
+W S F P KEI+S+ S FLW+G +L +K + W+ VC P +EGGLGIR
Sbjct: 78 TNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 133