BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0050.1
(227 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 105 9e-26
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 103 4e-25
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 103 4e-25
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 96 2e-22
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 94 7e-22
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 105 bits (262), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 3 GDDSSAITLNGVLTNFCLSTGLAANTMKSTVFWAGGAD-EGASVRSILGFDKGVLPVKYL 61
G SS + + F +GL + KST++ AG D + A + F G LPV+YL
Sbjct: 23 GKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADILHSFPFASGALPVRYL 82
Query: 62 GLPLVSSRLSYNDCIPLLNKIQFRIQSWKAIYLSFAGRVLLLKDVLNSMIIYWTSVFVFP 121
GLPL++ +++ +D PL+ KI+ RI W A +LSFAGR+ L+ V++S+ +W S F P
Sbjct: 83 GLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLP 142
Query: 122 KRMFKEINSLFSKFLWTG 139
KEI+S+ S FLW+G
Sbjct: 143 SACIKEIDSICSSFLWSG 160
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 103 bits (256), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 3 GDDSSAITLNGVLTNFCLSTGLAANTMKSTVFWAGGAD-EGASVRSILGFDKGVLPVKYL 61
G SS + + F +GL + KST++ AG D + A + F G LPV+YL
Sbjct: 23 GKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADILHSFPFASGALPVRYL 82
Query: 62 GLPLVSSRLSYNDCIPLLNKIQFRIQSWKAIYLSFAGRVLLLKDVLNSMIIYWTSVFVFP 121
GLPL++ +++ +D PL+ KI+ RI W A +LSFAGR+ L+ V++S+ +W S F P
Sbjct: 83 GLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLP 142
Query: 122 KRMFKEINSLFSKFLWTG 139
KEI+S+ S FLW+G
Sbjct: 143 SACIKEIDSICSSFLWSG 160
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 103 bits (256), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 3 GDDSSAITLNGVLTNFCLSTGLAANTMKSTVFWAGGAD-EGASVRSILGFDKGVLPVKYL 61
G SS + + F +GL + KST++ AG D + A + F G LPV+YL
Sbjct: 23 GKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADILHSFPFASGALPVRYL 82
Query: 62 GLPLVSSRLSYNDCIPLLNKIQFRIQSWKAIYLSFAGRVLLLKDVLNSMIIYWTSVFVFP 121
GLPL++ +++ +D PL+ KI+ RI W A +LSFAGR+ L+ V++S+ +W S F P
Sbjct: 83 GLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLP 142
Query: 122 KRMFKEINSLFSKFLWTG 139
KEI+S+ S FLW+G
Sbjct: 143 SACIKEIDSICSSFLWSG 160
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 95.5 bits (236), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 36 AGGAD-EGASVRSILGFDKGVLPVKYLGLPLVSSRLSYNDCIPLLNKIQFRIQSWKAIYL 94
AG D + A + F G LPV+YLGLPL++ +++ +D PL+ KI+ RI W A +L
Sbjct: 2 AGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHL 61
Query: 95 SFAGRVLLLKDVLNSMIIYWTSVFVFPKRMFKEINSLFSKFLWTG 139
SFAGR+ L+ V++S+ +W S F P KEI+S+ S FLW+G
Sbjct: 62 SFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSG 106
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 93.6 bits (231), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 40 DEGASVRSILGFDKGVLPVKYLGLPLVSSRLSYNDCIPLLNKIQFRIQSWKAIYLSFAGR 99
++ A + F G LPV+YLGLPL++ +++ +D PL+ KI+ RI W A +LSFAGR
Sbjct: 7 NDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGR 66
Query: 100 VLLLKDVLNSMIIYWTSVFVFPKRMFKEINSLFSKFLWTG 139
+ L+ V++S+ +W S F P KEI+S+ S FLW+G
Sbjct: 67 LQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSG 106